View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_132 (Length: 230)

Name: NF17651_high_132
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_132
NF17651_high_132
[»] chr5 (6 HSPs)
chr5 (31-224)||(41045943-41046135)
chr5 (62-224)||(31082169-31082330)
chr5 (78-224)||(22799107-22799255)
chr5 (100-224)||(19365985-19366108)
chr5 (31-101)||(16154735-16154805)
chr5 (1-30)||(41046402-41046431)
[»] chr3 (4 HSPs)
chr3 (31-224)||(11651860-11652052)
chr3 (31-107)||(48648902-48648978)
chr3 (31-107)||(51826782-51826858)
chr3 (175-203)||(51826988-51827016)
[»] chr7 (3 HSPs)
chr7 (31-224)||(31954523-31954715)
chr7 (31-107)||(31953586-31953662)
chr7 (122-162)||(31953690-31953730)
[»] chr4 (3 HSPs)
chr4 (31-224)||(5590331-5590526)
chr4 (31-224)||(48127844-48128039)
chr4 (31-107)||(24158549-24158625)
[»] chr1 (1 HSPs)
chr1 (31-224)||(50271092-50271301)
[»] chr2 (1 HSPs)
chr2 (32-201)||(23501819-23501996)
[»] chr6 (3 HSPs)
chr6 (30-107)||(33436003-33436080)
chr6 (122-162)||(33435935-33435975)
chr6 (175-203)||(33435845-33435873)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 41046135 - 41045943
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaattatgcattgaactt 130  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41046135 cttgcacgatacagcaacctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaattatgcattgaactt 41046036  T
Q  131 attgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  41046035 attgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtactcaatacgg-ttgacttgccatgattt 41045943  T

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Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 31082169 - 31082330
Alignment:
Q  62 aattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaattatgcattgaacttattgaacaagtagaacaacacttcaattcat 161  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  31082169 aattcaaaatattaatcaagattaaattaacaagcattattatgtaaaataaaattatgcattgaacttgttgaacaagtagaacagcacttcaattcat 31082268  T
Q  162 cggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31082269 tagtggcaatacattgttgttatgaattccatgtcctcaatacgg-ttgacttgccatgattt 31082330  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 22799107 - 22799255
Alignment:
Q  78 caagattaaattaacaagaattattatgtaaaaataaa---ttatgcattgaacttattgaacaagtagaacaacacttcaattcatcggtggcaataca 174  Q
    |||||||||||||||||| ||||||||||||||| |||   ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  22799107 caagattaaattaacaagcattattatgtaaaaaaaaaaaattatgcattgaacttgttgaacaagtagaacagcacttcaattcatcggtggcaataca 22799206  T
Q  175 ttgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
    ||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  22799207 ttgttgttatgaatttcatgtcctcaatacgg-ttgacttgccattattt 22799255  T

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Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 19365985 - 19366108
Alignment:
Q  100 attatgtaaaaataaattatgcattgaacttattgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctc 199  Q
    |||||||||||| | |||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||    
T  19365985 attatgtaaaaaaatattatgcattgaacttgttgaagaagtagaacaacacttcatatcatcggtggcaatacagcgttgttatgaattccatgtcctc 19366084  T
Q  200 aatacggtttgacttgccatgattt 224  Q
    ||||||| |||||||||||||||||    
T  19366085 aatacgg-ttgacttgccatgattt 19366108  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 16154805 - 16154735
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattat 101  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  16154805 cttgcacgatacagccgcctcgatcattttgaattcaaaatattaatcaagatttaattaacaagcattat 16154735  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41046431 - 41046402
Alignment:
Q  1 agaatatacacaatattacattgttttcta 30  Q
    ||||||||||||||||||||||||||||||    
T  41046431 agaatatacacaatattacattgttttcta 41046402  T

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Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 11652052 - 11651860
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaattatgcattgaactt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11652052 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagcattattatgtaaaaataaattatgcattgaactt 11651953  T
Q  131 attgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
     |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11651952 gttgaacaagtagaacagcacttcaattcatcagtggcaatacattgttgttatgaattccatgtcctcaatacgg-ttgacttgccatgattt 11651860  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 48648978 - 48648902
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48648978 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagcattattatgta 48648902  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 51826782 - 51826858
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgta 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51826782 cttgcacgatacagcaacctcaatcattttgaattcaaaatattaatcaagattaaattaacaagcattattatgta 51826858  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 51826988 - 51827016
Alignment:
Q  175 ttgttgttatgaattccatgtcctcaata 203  Q
    |||||||||||||||||||||||||||||    
T  51826988 ttgttgttatgaattccatgtcctcaata 51827016  T

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Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 31954523 - 31954715
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaattatgcattgaactt 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  31954523 cttgcacgatacagcagcctcgatcattttgaattcaaaatattaatcaagattaaattaacaagcaatattatgtaaaaataaattatgcattgaactt 31954622  T
Q  131 attgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
     |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||    
T  31954623 gttgaacaagtagaacagcacttcaattcatcggtggcaatacattgttgttatgaatttcatgtcctcaatacgg-ttgacttgtcatgattt 31954715  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 31953586 - 31953662
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgta 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  31953586 cttgcacgacacagcagcctcaatcattttgaattcaaaatattaatgaagattaaattaacaagcattattatgta 31953662  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 31953690 - 31953730
Alignment:
Q  122 attgaacttattgaacaagtagaacaacacttcaattcatc 162  Q
    ||||||||| ||||||||||||||||| ||||| |||||||    
T  31953690 attgaacttgttgaacaagtagaacaagacttccattcatc 31953730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 5590331 - 5590526
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaa---ttatgcattgaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||   ||||||||||||    
T  5590331 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagatttaattaacaagcattattatgtaaaaaaaaaaaattatgcattgaa 5590430  T
Q  128 cttattgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  5590431 cttgttgaacaagtagaacaacacttcaattcatcggtggaaatacattgttgttatgaattacatgtcctcaatacgg-ttgacttgccatgattt 5590526  T

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Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 48128039 - 48127844
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaa---ttatgcattgaa 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||   ||||||||||||    
T  48128039 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagatttaattaacaagcattattatgtaaaaaaaaaaaattatgcattgaa 48127940  T
Q  128 cttattgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgacttgccatgattt 224  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  48127939 cttgttgaacaagtagaacaacacttcaattcatcggtggaaatacattgttgttatgaattacatgtcctcaatacgg-ttgacttgccatgattt 48127844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 24158625 - 24158549
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24158625 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagcattattatgta 24158549  T

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Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 50271092 - 50271301
Alignment:
Q  31 cttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaaataaa--------------- 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||                   
T  50271092 cttgcacgatacagcaacctcaatcattttgaattcaaaatattaatcaagattaaattaacaagcattattatgtaaaaaaaaaataaaaaataaaaaa 50271191  T
Q  116 --ttatgcattgaacttattgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacggtttgact 213  Q
      ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50271192 aattatgcattgaacttgttgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaatacgg-ttgact 50271290  T
Q  214 tgccatgattt 224  Q
    |||||||||||    
T  50271291 tgccatgattt 50271301  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 23501819 - 23501996
Alignment:
Q  32 ttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgtaaaa--------ataaattatgcat 123  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||        ||| ||  |  ||    
T  23501819 ttgcacgatacactagcctcaatcatttttaattcaaaatattaatcaagattaaattaacaagcattattatgtaaaaatgtatgcatacatgttctat 23501918  T
Q  124 tgaacttattgaacaagtagaacaacacttcaattcatcggtggcaatacattgttgttatgaattccatgtcctcaa 201  Q
    ||||||| | ||||||||| ||||||||| ||||||||| |||| |||| ||||||||||| ||||| ||||||||||    
T  23501919 tgaacttgtcgaacaagtataacaacactacaattcatcagtggtaatatattgttgttatcaattctatgtcctcaa 23501996  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 33436080 - 33436003
Alignment:
Q  30 acttgcacgatacagcagcctcaatcattttgaattcaaaatattaatcaagattaaattaacaagaattattatgta 107  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33436080 acttgcacgatacagcaacctcagtcagtttgaattcaaaatattaatcaagattaaattaacaagcattattatgta 33436003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 33435975 - 33435935
Alignment:
Q  122 attgaacttattgaacaagtagaacaacacttcaattcatc 162  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  33435975 attgaacttgttgaacaagtagaacaacacttccattcatc 33435935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 33435873 - 33435845
Alignment:
Q  175 ttgttgttatgaattccatgtcctcaata 203  Q
    |||||||||||||||||||||||||||||    
T  33435873 ttgttgttatgaattccatgtcctcaata 33435845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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