View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_138 (Length: 222)

Name: NF17651_high_138
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_138
NF17651_high_138
[»] chr1 (6 HSPs)
chr1 (1-222)||(17810724-17810945)
chr1 (1-222)||(44613559-44613780)
chr1 (2-209)||(11543500-11543707)
chr1 (22-222)||(44145823-44146026)
chr1 (1-217)||(44794558-44794774)
chr1 (5-222)||(35899936-35900150)
[»] chr3 (2 HSPs)
chr3 (5-222)||(26729106-26729323)
chr3 (1-219)||(8343516-8343734)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-222)||(28201-28422)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-222)||(170370-170591)
scaffold0017 (1-222)||(181457-181678)
[»] chr5 (1 HSPs)
chr5 (44-222)||(29506633-29506811)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17810724 - 17810945
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17810724 aagttttctcaaataacatacatttgaaggtatacttccacttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccat 17810823  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17810824 gaaggtaatggaccatgaaacttattttctccgaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 17810923  T
Q  201 tatttcttaaaatcaaagcctc 222  Q
    ||||||||||||||||||||||    
T  17810924 tatttcttaaaatcaaagcctc 17810945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44613780 - 44613559
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||| |||  ||||| | |||||||||||  ||||||   || |||||| ||||||| ||||||||| |||| |  |||||  | ||||||| |||     
T  44613780 aagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccat 44613681  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| |||||  ||||| |||||||| ||||||| ||||||||||||||||| ||    
T  44613680 gaaggtaatggaccatgaaacttattttctccaagatccaacaaagccaacttgtttgagcaattcttcaaagaggaaggaagttgtccactcaaactat 44613581  T
Q  201 tatttcttaaaatcaaagcctc 222  Q
    ||||||||||||||||||||||    
T  44613580 tatttcttaaaatcaaagcctc 44613559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 11543500 - 11543707
Alignment:
Q  2 agttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccacg 101  Q
    |||||||| | |||||| | |||||||||||| |||||| | || ||||||  || ||| ||||||||||||| ||| |||||| || |||||| ||| |    
T  11543500 agttttcttaaataacagagatttgaaggtatacttccactgaagttattggctcaaaggcttaagattactagttgttgtaaactgcctccaatccatg 11543599  T
Q  102 aaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccatt 201  Q
    ||||||| |||||||||||| |||||||||| |||||||| | ||||| |||||| ||||| ||||||||||| |||| ||||||||||||||||| |||    
T  11543600 aaggtaacggaccatgaaacgtattttctccaaggtccaagatagccaacttgtctgagcaattcttcaatgaagaaggaagttgtccactcaaactatt 11543699  T
Q  202 atttctta 209  Q
    ||||||||    
T  11543700 atttctta 11543707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 44146026 - 44145823
Alignment:
Q  22 atttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccacgaag---gtaatggaccatga 118  Q
    |||||||||||  |||||| | || ||||||||| | || |||||||||||||||||||||||| | ||||||| ||| ||||   ||||  ||||||||    
T  44146026 atttgaaggtagacttccattgaagttattgaattggaggcttaagattactaattggtgtaaactatctccaatccatgaagaaggtaacagaccatga 44145927  T
Q  119 aacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatttcttaaaatcaaag 218  Q
    ||| |||||||||| || ||||||||||||| |||||  ||||| ||||||||||| |||| ||||||||||||||||  || |||||||||||||||||    
T  44145926 aacatattttctccaagatccaacaaagccaacttgtttgagcaattcttcaatgaagaaggaagttgtccactcaaattatcatttcttaaaatcaaag 44145827  T
Q  219 cctc 222  Q
    ||||    
T  44145826 cctc 44145823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 44794558 - 44794774
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||| |||  ||||| | |||||||||||  ||||||   || |||||| ||||||| ||||||||| |||| |  |||||  | ||||||| |||     
T  44794558 aagttttgtcaagtaacagagatttgaaggtaaacttccatagaagttattggatcgaaggcttaagatttctaaattttgtaagctatctccaatccat 44794657  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| |||||  ||| | |||||||| ||||||| ||||||||||||||||| ||    
T  44794658 gaaggtaatggaccatgaaacttattttctccaagatccaacaaagccaacttgtttgagaaattcttcaaagaggaaggaagttgtccactcaaactat 44794757  T
Q  201 tatttcttaaaatcaaa 217  Q
    |||||||||||| ||||    
T  44794758 tatttcttaaaaccaaa 44794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 35900150 - 35899936
Alignment:
Q  5 tttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccacgaag 104  Q
    ||||||| |||||| | |||||||||||  |||||| | || |||||||| ||||| |||||||||| ||||||||| ||| | ||||||| |||  |||    
T  35900150 tttctcaaataacagagatttgaaggtagacttccattgaatttattgaaccgaaggcttaagattattaattggtgcaaactatctccaatccataaag 35900051  T
Q  105 gtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatt 204  Q
    ||||||||||||||||  |||||||||| || ||||| |||||||    ||  ||||| ||||| |||||||||| ||||||||| | ||||  ||||||    
T  35900050 gtaatggaccatgaaatatattttctccaagatccaataaagcca---agtttgagcaattctttaatgaggaaggaagttgtccccccaaattattatt 35899954  T
Q  205 tcttaaaatcaaagcctc 222  Q
    | ||||| ||||||||||    
T  35899953 tgttaaactcaaagcctc 35899936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 26729323 - 26729106
Alignment:
Q  5 tttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccacgaag 104  Q
    ||||||| |||||| | |||||||||||| ||||||   || |||||||| ||||| ||||| |||| ||||||  ||||| | ||||||| ||| | ||    
T  26729323 tttctcaaataacaaatatttgaaggtatacttccatagaagttattgaaccgaaggcttaatattattaattgccgtaaactctctccaatccatgcag 26729224  T
Q  105 gtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatt 204  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| |||||  || || |||||||||||||||||||||||||||||||||| ||||||    
T  26729223 gtaatggaccatgaaacatattttctccaaggtccaacaaagccaacttgtttgaacaattcttcaatgaggaagtaagttgtccactcaaactattatt 26729124  T
Q  205 tcttaaaatcaaagcctc 222  Q
    ||||||||||||||||||    
T  26729123 tcttaaaatcaaagcctc 26729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8343734 - 8343516
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||||||| |||||| | |||||||||||| |||||| | || ||||||| |||||  ||||||||||||||||| ||||| |||||||||| |||     
T  8343734 aagttttctcaaataacaaagatttgaaggtatacttccattgaagttattgactcgaatgcttaagattactaattgatgtaagttgtctccaatccat 8343635  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||||||||||||||||||||| |  |||||||||| || ||| |  ||||| || ||||| ||||||| ||||||||||||||||| ||    
T  8343634 gaaggtaatggaccatgaaacttattttctccaatttccaacaaagtcaacttttttgagcaatttttcaaggaggaaggaagttgtccactcaaactat 8343535  T
Q  201 tatttcttaaaatcaaagc 219  Q
    || |||||||||| |||||    
T  8343534 tacttcttaaaattaaagc 8343516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28201 - 28422
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||| ||| |||||||| |||||||||||  |||||| | || |||||||||||||| |||||||||||||||||  |||| |||||||||| |||     
T  28201 aagttttgtcaaataacatagatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccat 28300  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||| |||||| |||||||||| || ||||||| ||||| |||||  ||| | |||||||| ||||||| |||||| |||||||||| ||    
T  28301 gaaggtaatggaccttgaaacatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactat 28400  T
Q  201 tatttcttaaaatcaaagcctc 222  Q
    |||||||||||| |||||||||    
T  28401 tatttcttaaaaccaaagcctc 28422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 170591 - 170370
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||| ||| |||||||| |||||||||||  |||||| | || |||||||||||||| |||||||||||||||||  |||| |||||||||| |||     
T  170591 aagttttgtcaaataacatagatttgaaggtagacttccattgaagttattgaatcgaaggcttaagattactaattgtcgtaagttgtctccaatccat 170492  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    |||||||||||||| |||||| |||||||||| || ||||||| ||||| |||||  ||| | |||||||| ||||||| |||||| |||||||||| ||    
T  170491 gaaggtaatggaccttgaaacatattttctccaagatccaacatagccaacttgtttgagaaattcttcaaagaggaaggaagttggccactcaaactat 170392  T
Q  201 tatttcttaaaatcaaagcctc 222  Q
    |||||||||||| |||||||||    
T  170391 tatttcttaaaaccaaagcctc 170370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 181678 - 181457
Alignment:
Q  1 aagttttctcagataacatacatttgaaggtattcttccagttaaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccac 100  Q
    ||||||| ||| |||||| | ||||||||| |   ||||| | || || ||||||||||| |||||||||||||||||||||||| | | ||||| |||     
T  181678 aagttttgtcaaataacagagatttgaaggaagaattccattgaagttgttgaatcgaaggcttaagattactaattggtgtaaactttgtccaatccat 181579  T
Q  101 gaaggtaatggaccatgaaacttattttctcctaggtccaacaaagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccat 200  Q
    | |||||||||||||||||||||||||||||| || ||||||| ||||| |||||   |||| ||||||||  |||||| |||||| ||||||| || ||    
T  181578 gcaggtaatggaccatgaaacttattttctccaagatccaacagagccaacttgttttagcaattcttcaaacaggaaggaagttgaccactcatactat 181479  T
Q  201 tatttcttaaaatcaaagcctc 222  Q
    |||||||||||| |||| ||||    
T  181478 tatttcttaaaaccaaaacctc 181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 29506633 - 29506811
Alignment:
Q  44 aaattattgaatcgaagacttaagattactaattggtgtaaattgtctccaacccacgaaggtaatggaccatgaaacttattttctcctaggtccaaca 143  Q
    |||| ||||| |||||| |||||||||| ||| ||||||||| ||||||||| ||| ||||||| ||||||||||||| |||||||||| ||||||||||    
T  29506633 aaatcattgagtcgaaggcttaagattattaactggtgtaaactgtctccaatccatgaaggtattggaccatgaaacatattttctccaaggtccaaca 29506732  T
Q  144 aagccagcttgtcggagcatttcttcaatgaggaagtaagttgtccactcaaaccattatttcttaaaatcaaagcctc 222  Q
    ||||||  ||||  || || |||||||| ||||||| || ||||||||||||||  |||||||||||||||||||||||    
T  29506733 aagccaatttgtttgaacaattcttcaaggaggaaggaaattgtccactcaaactgttatttcttaaaatcaaagcctc 29506811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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