View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_139 (Length: 220)
Name: NF17651_high_139
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_139 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51030966 - 51031181
Alignment:
| Q |
1 |
tgttgaaacaaactatttaatttgtatagggaaaagaaagggtattaattattcaccttggttaataggagtccatgtgaaaaaccaataaacactattc |
100 |
Q |
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| T |
51030966 |
tgttgaaacaaaatatttaatttgtatatggaaaagaaagggtatta----ttcaccttggttaataggagtccatgtgaaaaaccaataaacacttttc |
51031061 |
T |
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| Q |
101 |
tcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaagttgtgagtggtcttcaactctgcataacctctgg |
200 |
Q |
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| T |
51031062 |
tcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaggttgtgagtggtcttcaactctgcataacctctgg |
51031161 |
T |
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| Q |
201 |
ttgcatatctccctgtgtat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
51031162 |
ttgcatatctccctgtgtat |
51031181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51063718 - 51063933
Alignment:
| Q |
1 |
tgttgaaacaaactatttaatttgtatagggaaaagaaagggtattaattattcaccttggttaataggagtccatgtgaaaaaccaataaacactattc |
100 |
Q |
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| T |
51063718 |
tgttgaaacaaaatatttaatttgtatatggaaaagaaagggtatta----ttcaccttggttaataggagtccatgtgaaaaaccaataaacacttttc |
51063813 |
T |
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| Q |
101 |
tcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaagttgtgagtggtcttcaactctgcataacctctgg |
200 |
Q |
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| T |
51063814 |
tcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaggttgtgagtggtcttcaactctgcataacctctgg |
51063913 |
T |
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| Q |
201 |
ttgcatatctccctgtgtat |
220 |
Q |
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| T |
51063914 |
ttgcatatctccctgtgtat |
51063933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 219
Target Start/End: Complemental strand, 40616990 - 40616822
Alignment:
| Q |
51 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
150 |
Q |
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| T |
40616990 |
attcaccttggcttgtaggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcat |
40616891 |
T |
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| Q |
151 |
gaacattggttcaaagttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgtgta |
219 |
Q |
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| T |
40616890 |
gaacattggttccaactcatgattggtctcgcactctgaatagcccctggctgcatatctccctgtgta |
40616822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 51035253 - 51035397
Alignment:
| Q |
51 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
150 |
Q |
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| T |
51035253 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
51035352 |
T |
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| Q |
151 |
gaacattggttcaaagttgtgagtggtcttcaactctgcataacc |
195 |
Q |
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| T |
51035353 |
gaacattggttcaagttcgtgagtgtccttcaactctacataacc |
51035397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 51069240 - 51069389
Alignment:
| Q |
67 |
aggagtccatgtgaaaaaccaataaacactattctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcatgaacattggttcaaag |
166 |
Q |
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| T |
51069240 |
aggagtccaagtgaaaaaccagtaaacacctttctcatgacaaggaacaactccagctctaaaacctttgccatagaactgcataagcataggctcaaaa |
51069339 |
T |
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| Q |
167 |
ttgtgagtggtcttcaactctgcataacctctggttgcatatctccctgt |
216 |
Q |
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| T |
51069340 |
ctgtgattgttttccaactctgcgaaacccctgattccatatctccctgt |
51069389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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