View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_145 (Length: 205)
Name: NF17651_high_145
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_145 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 32567974 - 32567804
Alignment:
| Q |
16 |
acaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcac |
115 |
Q |
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| T |
32567974 |
acaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaacgaattgccacctgcaaaattgcagtattagttggagcac |
32567875 |
T |
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| Q |
116 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32567874 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcaacagtctttgtttttcctgtc |
32567804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 32646404 - 32646570
Alignment:
| Q |
16 |
acaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcac |
115 |
Q |
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| T |
32646404 |
acaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcac |
32646503 |
T |
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| Q |
116 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcc |
182 |
Q |
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| T |
32646504 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcaacagtctttgtttttcc |
32646570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 32532357 - 32532527
Alignment:
| Q |
16 |
acaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcac |
115 |
Q |
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| T |
32532357 |
acaatgtcacccaaactatatgtatcatgctcaagtgaatccataactaacctattcaaccgacttgccacctgcaaaattgcagtattagttggagcac |
32532456 |
T |
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| Q |
116 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
186 |
Q |
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| T |
32532457 |
aagtcaatgttctggtttgtaacttgagtagagaaaataacaagcatgcaactgtcttagttttccctgtc |
32532527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 32525965 - 32526135
Alignment:
| Q |
16 |
acaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcac |
115 |
Q |
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||||||||||||| ||||||||| ||| | ||||||||||| |||| || |||||||| ||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
32525965 |
acaatgtcacctagaccatatgtttcaagctcaagtgaatccataaccaacctatgcaatcgaattgccacttgcaaaactgcagtattagtaggagcac |
32526064 |
T |
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| Q |
116 |
aggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
186 |
Q |
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| ||||||||||| | ||| |||| ||||| |||||| ||||||||||| || ||||| ||||| |||||| |
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| T |
32526065 |
aagtcaatgttctggtttttaactcgagtaaagaaaatagcaagcatgcaactgtcttcgttttccctgtc |
32526135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 32614866 - 32615037
Alignment:
| Q |
15 |
aacaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagca |
114 |
Q |
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||||||||| |||||||| ||||||||||| |||| |||||| ||||||||||||| | | | ||||||| ||||||||||| ||||| |||||||| |
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| T |
32614866 |
aacaatgtctcctaaaccgtatgtatcatgctcaactgaatccataactaaactatgtattctagttgccacttgcaaaattgcggtatttgttggagcg |
32614965 |
T |
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| Q |
115 |
caggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
186 |
Q |
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|| || | |||||| | ||| ||||||| ||||||||| | ||||||||| |||||||| ||||| |||||| |
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| T |
32614966 |
caagttagtgttctggtttttaacttgaatagagaaaacaacaagcatgcaacagtcttcgttttccctgtc |
32615037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 28857227 - 28857310
Alignment:
| Q |
96 |
tgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttt |
179 |
Q |
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||||||||||||||||||||| || |||||||| | ||| |||||||| || ||||| | |||| | || || ||||||||||| |
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| T |
28857227 |
tgcagtattagttggagcacatgttaatgttctggctttaaacttgagcagggaaaataacaaggaagccactgtctttgtttt |
28857310 |
T |
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