View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_16 (Length: 526)
Name: NF17651_high_16
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 53034419 - 53034009
Alignment:
| Q |
14 |
gaacaaaagcaagaactaatacaggaaatcttgagcatgaaccataaatttaaatccataactaaacaaattaaaaggactataaatattggtcgtccaa |
113 |
Q |
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| T |
53034419 |
gaacaaaagcaagaactaatacaggaaatcttgaacatgaaccataaatttaaatccataactaaacaaattaaaaggactataaatattggtcgtccaa |
53034320 |
T |
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| Q |
114 |
ttaatctgtgaaacttactcatctatacgggttgtggctaaatactaaaatgtagggtccttgacggtgcattagtataattgtggattaatatagtcaa |
213 |
Q |
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| T |
53034319 |
ttaatctgtgaaacttactcatctatacgggttgtggctaaatactaaaatgtagggtccttgacggtgcattagtataattgtggattaatatagtcaa |
53034220 |
T |
|
| Q |
214 |
cgagaaatatctaactttgctgtgttgactaactgttgctccatttcccagcttagctttggagccacaccacagtgttttggaacatattcctgttcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53034219 |
cgagaaatatctaactttgctgtgttgactaactgttgctccatttcccagcttagctttggagccacaccacagtgttttggaacatattcctgttcaa |
53034120 |
T |
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| Q |
314 |
agtagaaaatcaacggttgatataattataaataatttgagcataccgtgtgtgttgtcccccaatcatgtgcagatctataattagatgtacaagtgtt |
413 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53034119 |
agtagaaaatcagcggttgatataattatcaataatttgagcataccgtgtgtgttgtcccccaatcatgtgcagatctataattagatgtacaagtgtt |
53034020 |
T |
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| Q |
414 |
aaatgtacgtg |
424 |
Q |
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| T |
53034019 |
aaatgtacgtg |
53034009 |
T |
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