View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_17 (Length: 513)
Name: NF17651_high_17
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 55545364 - 55544861
Alignment:
| Q |
1 |
tcatgctcaaggaaataggaattgaaataatgggtgcaatttagaaagctagtgcttcctcccatggaatatgtatgataaagagaagtataatgaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55545364 |
tcatgctcaaggaaataggaattgaaataatgggtgcaatttagaaagctagtgcttcctcccatggaatatctatgataaagagaagtataatgaccta |
55545265 |
T |
|
| Q |
101 |
gtatttaatcttttttcactgaaaattagtgcaggatgagtaggatttttattgatgttctgctttgtaacnnnnnnnnn-gtattttgtttcctggttc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55545264 |
gtatttaatcttttttcactgaaaattagtgcaggatgagtaggatttttattgatgttctgctttgtaacttttttttttgtattttgtttcctggttc |
55545165 |
T |
|
| Q |
200 |
aatgttggatgcccaatatactaatttaactcagacgtggattgaataatggtgactgctttgnnnnnnnngtatccaatgaaagctgataaaaagctca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55545164 |
aatgttggatgcccaatatactaatttaactcagacgtggattgaataatggtgactgctttgttttttttgtatccaatgaaagctgataaaaagctca |
55545065 |
T |
|
| Q |
300 |
gcagcgctacttctgcagttatttcctggacagttactatgtggcagcatctaaggtgaagtttgcaattagtgtgttcttttagagaagttttgaggat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55545064 |
gcagcgctacttctgcagttatttcctggacagttactatgtggcagcatctaaggtgaagtttgcaattagtgtgttcttttagagaagttttgaggat |
55544965 |
T |
|
| Q |
400 |
agttcaccgcatccttttgtgtcatttgtactacttacattcctttatatatcgtttaagttggtgctactttcaacaatctttctcctgggggtgggtc |
499 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
55544964 |
agttcaccacatccttttgtgtcatttgtactacttacattcctttatatatcgtttaagttggtgctactttcaacaaactttctcctgggagtgggtc |
55544865 |
T |
|
| Q |
500 |
tgtg |
503 |
Q |
| |
|
|||| |
|
|
| T |
55544864 |
tgtg |
55544861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University