View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_19 (Length: 491)
Name: NF17651_high_19
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 136 - 471
Target Start/End: Original strand, 8679312 - 8679647
Alignment:
| Q |
136 |
acaataaaagtataatttgccttgtgataattttagcaaaaagccaaaattacacattgtacagcattgatagatttcacattgcatcccttaaatccag |
235 |
Q |
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| T |
8679312 |
acaataaaagtatagtttgccttgtgataattttagcaaaaagccaaaattacacattgtacagcattgatagatttcacagtgcatcccttaaatccag |
8679411 |
T |
|
| Q |
236 |
ccattttgatcagatattcccactctttcagggtacgttctttgccatagttagtgtgggccatcatcaccgtatctaagactaaccctacatctttata |
335 |
Q |
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| T |
8679412 |
ccattttgatcacatattcccactctttcagggtacgttctttgccatagttagtgtgtgccatcatcaccatgtctaacactaaccctacatctttata |
8679511 |
T |
|
| Q |
336 |
cttgtggtttcctccttcttcaatcactgcttccacgataattactcttccattgtcatttggaatagcttccttacatttcttcaatatttggatgcat |
435 |
Q |
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| T |
8679512 |
cttgtggtttcctccttcttcaatcactgcttccacgataattactcttccattgtcatttggaatagcttccttacatttcttcaatatttggatgcat |
8679611 |
T |
|
| Q |
436 |
tcttcatccccccaatcatgcaaaatccactgcaag |
471 |
Q |
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| T |
8679612 |
tcttcatccccccaatcatgcaaaatccgctgcaag |
8679647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8677760 - 8677901
Alignment:
| Q |
1 |
tgggaatttactccaaatcagtataaataatttcctcgtatctcatcaaggtggacaatctttccaatggatctaatgattatttattatattctacatc |
100 |
Q |
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| T |
8677760 |
tgggaatttactccaaatcagtataaatagtttcctcgtatctcatcaaggtggacaatctttaatatggatctaatgattatctattatattctacatc |
8677859 |
T |
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| Q |
101 |
atggtactataatgcataatgcatgcttaattaacacaataa |
142 |
Q |
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| T |
8677860 |
atggtactataatgcataatgcatgcttaattaacacaataa |
8677901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 8696920 - 8696816
Alignment:
| Q |
1 |
tgggaatttactccaaatcagtataaataatttcctcgtatctcatcaaggtggacaatctttccaatggatctaatgattatttat--tatattctaca |
98 |
Q |
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| T |
8696920 |
tgggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatatattctaca |
8696821 |
T |
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| Q |
99 |
tcatg |
103 |
Q |
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||||| |
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| T |
8696820 |
tcatg |
8696816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 196 - 469
Target Start/End: Original strand, 37740167 - 37740446
Alignment:
| Q |
196 |
acagcattgatagatttcacattgcatcccttaaatccagccattttgatcagatattcccactctttcagggtacgttctttgccatagttagtgtggg |
295 |
Q |
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||||||||||||||||||||| || | | || ||||||||||||||||||| ||||||||| ||||| || || | |||||||||| ||| ||||| | |
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| T |
37740167 |
acagcattgatagatttcacaatgagtgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtg |
37740266 |
T |
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| Q |
296 |
ccatcatcaccgtatctaagactaaccctacatctttatacttgtggt---ttcct---ccttcttcaatcactgcttccacgataattactcttccatt |
389 |
Q |
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||||||||||| | ||||| | ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| ||||||| |
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| T |
37740267 |
ccatcatcaccatgtctaacattaaccctacgtctttatacttgttgtgttttccttctccttcttcaatcactgcttccacaataataacttttccatt |
37740366 |
T |
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| Q |
390 |
gtcatttggaatagcttccttacatttcttcaatatttggatgcattcttcatccccccaatcatgcaaaatccactgca |
469 |
Q |
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|| |||||||| ||||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
37740367 |
ttcttttggaattgcttctctacagttctttaagatttggatgcactcttcatccccccaatcatgcaaaacccactgca |
37740446 |
T |
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