View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_20 (Length: 490)
Name: NF17651_high_20
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 104 - 476
Target Start/End: Original strand, 19137101 - 19137473
Alignment:
| Q |
104 |
agggatattaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcgacgagttcatccaatgattccggttgaggat |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19137101 |
agggatactaatgcatgatcttttgctcaaatgctgttaccacgacacagctagcaactgtaataatcaacgagttcatccaatgattccggttgaggat |
19137200 |
T |
|
| Q |
204 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137201 |
cagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagccacgttaaccgtatcatcttcatcatttacctcggtcgaatcgcgtga |
19137300 |
T |
|
| Q |
304 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacagggcgaaggtcttgt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19137301 |
cctatccacaagctccttaaaaagaggatgaccaacaacttcagagttaacaaggtatcgccgccgtgtctttcccacaaacacggggcgaaggtcttgt |
19137400 |
T |
|
| Q |
404 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137401 |
gtcgactcatcatcattcacaaccgctctgatactggagcggttgtgcttgttgttgttgttgtaataggtga |
19137473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19137004 - 19137078
Alignment:
| Q |
1 |
gtggagaaccaggtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaagcattatg |
75 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19137004 |
gtggagaaccaagtcatatagattaatgactaatctctgattaatcggtcttatttgtttaacctaagcattatg |
19137078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 51687418 - 51687326
Alignment:
| Q |
163 |
gtaataatcgacgagttcatccaatgattccggttgaggatcagtattctcaatcatccacaacatatgctcgaacaagacaacctcacaagc |
255 |
Q |
| |
|
|||| ||||||| |||||||| | ||||| ||||||||||||| ||| |||| |||||| |||| ||| ||||| | ||||||||||||||| |
|
|
| T |
51687418 |
gtaaaaatcgacaagttcatcaagagattcaggttgaggatcagcattttcaagcatccataacaaatgttcgaaaaggacaacctcacaagc |
51687326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University