View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_21 (Length: 481)
Name: NF17651_high_21
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_21 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 7901 - 7538
Alignment:
| Q |
17 |
agaggatttgtcactggaagagacattggaataatcaagggtagttgaagctcggatcttaaagggtttaagaagataaacagagtgagagagaaagggt |
116 |
Q |
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| T |
7901 |
agaggatttgtcactggaagagacattggaataatcaagggtagttgaagctcggatcttaaagggtttaagaagataaacagagtgagagagaaagggt |
7802 |
T |
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| Q |
117 |
ttgcgaaatttggtgtaaaggttagaacttgaaggtgaagtagcgataaatgttgcagagagagccattagaggatgcagaatttcaagaatgaaaaatt |
216 |
Q |
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| T |
7801 |
ttgcgaaatttggtgtaaaggttagaacttgaaggtgaaggagtgatgaatgttgcagagagagccattagaggatgcagaatttcaagaataaaaaatt |
7702 |
T |
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| Q |
217 |
gaacaatgatataatgaaaaggttttaaggttaataaaaaaccacggaatggaagtatagcagaaaatactgaccgtggacttgattagatttttacgtt |
316 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7701 |
gaacaatgatataatgacaagg-tttaaggttaataaaaaaccacggaatggaagtatagcagaaaatactgaccgtggacttgattagattcttacgtt |
7603 |
T |
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| Q |
317 |
ggtggaagctaaaatgacaaattaacaactatcacgaatttagctacatggttgtccgaaacaac |
381 |
Q |
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| T |
7602 |
ggtggaagctaaaatgacaaattaacaactatcacgaatttagctacatggttgtccgaaacaac |
7538 |
T |
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