View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_26 (Length: 442)

Name: NF17651_high_26
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_26
NF17651_high_26
[»] scaffold0103 (3 HSPs)
scaffold0103 (167-302)||(4526-4663)
scaffold0103 (38-168)||(4909-5037)
scaffold0103 (350-427)||(4382-4459)
[»] chr6 (10 HSPs)
chr6 (38-147)||(2624526-2624634)
chr6 (167-302)||(2635346-2635483)
chr6 (37-168)||(2592997-2593126)
chr6 (38-168)||(2634972-2635100)
chr6 (174-288)||(2566565-2566679)
chr6 (216-265)||(2593378-2593427)
chr6 (350-427)||(2635550-2635627)
chr6 (96-166)||(2568169-2568238)
chr6 (97-134)||(2595669-2595706)
chr6 (97-134)||(2640535-2640572)


Alignment Details
Target: scaffold0103 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 4663 - 4526
Alignment:
Q  167 tattatcagtcaattatattctt-atcgcatggtcaacctaaaagtactaatgggattggactcttatttgatgattttgtt-agcatgaaacaaccact 264  Q
    |||||||||||||||| |||||| |||||||   || ||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  4663 tattatcagtcaattacattctttatcgcataaccatcctaaaattacttatgggattggactcttatttgatgattttttttagcatgaaacaaccact 4564  T
Q  265 tcctgcataagcactctttgtcattctttgtccatgac 302  Q
    || |||||||||||||||||||||| |||| |||||||    
T  4563 tcatgcataagcactctttgtcattatttggccatgac 4526  T

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Target: scaffold0103; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 5037 - 4909
Alignment:
Q  38 tatatgaataaaaccatgactcccacctagnnnnnnnngtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatatt 137  Q
    |||||||||||||||||| |||||||||||        | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |  |    
T  5037 tatatgaataaaaccatggctcccacctagaaaataa-gcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgt 4939  T
Q  138 attaatattgttaaatgtcaattttgattta 168  Q
    |||||||||||| ||||||||||||||||||    
T  4938 attaatattgtt-aatgtcaattttgattta 4909  T

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Target: scaffold0103; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 4459 - 4382
Alignment:
Q  350 ctaaaaaattgggacgtttttcaagcatcttcgatgcgagcgtttgtctaaagagttgttttctcttgatctttgggc 427  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||||||| | |  ||||| |||||||| ||||||    
T  4459 ctaaaaaaatgggacatttttcaagcgtcttcgatgcgagcgtttgtctaaggcgacgttttttcttgatcattgggc 4382  T

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Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 2624526 - 2624634
Alignment:
Q  38 tatatgaataaaaccatgactcccacctagnnnnnnnngtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatatt 137  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2624526 tatatgaataaaaccatgactcccaccta-aaaaaaaagtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatatt 2624624  T
Q  138 attaatattg 147  Q
    ||||||||||    
T  2624625 attaatattg 2624634  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 2635346 - 2635483
Alignment:
Q  167 tattatcagtcaattatattctt-atcgcatggtcaacctaaaagtactaatgggattggactcttatttgatgattttgtt-agcatgaaacaaccact 264  Q
    |||||||||||||||| |||||| |||||||   || ||||||| |||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  2635346 tattatcagtcaattacattctttatcgcataaccatcctaaaattacttatgggattggactcttatttgatgattttttttagcatgaaacaaccact 2635445  T
Q  265 tcctgcataagcactctttgtcattctttgtccatgac 302  Q
    || |||||||||||||||||||||| |||| |||||||    
T  2635446 tcatgcataagcactctttgtcattatttggccatgac 2635483  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 2592997 - 2593126
Alignment:
Q  37 ctatatgaataaaaccatgactcccacctagnnnnnnnngtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatat 136  Q
    ||||||||||||||||||| |||||||||||        | ||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||      
T  2592997 ctatatgaataaaaccatggctcccacctagaaaataa-gcggagttagggagatgacacttattgaagtagtcttgtttaacctcttatttaaaaattg 2593095  T
Q  137 tattaatattgttaaatgtcaattttgattta 168  Q
    ||||||||||||| ||||||||||||||||||    
T  2593096 tattaatattgtt-aatgtcaattttgattta 2593126  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 2634972 - 2635100
Alignment:
Q  38 tatatgaataaaaccatgactcccacctagnnnnnnnngtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatttgaaaatatt 137  Q
    |||||||||||||||||| |||||||||||        | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |  |    
T  2634972 tatatgaataaaaccatggctcccacctagaaaataa-gcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttgt 2635070  T
Q  138 attaatattgttaaatgtcaattttgattta 168  Q
    |||||||||||| ||||||||||||||||||    
T  2635071 attaatattgtt-aatgtcaattttgattta 2635100  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 174 - 288
Target Start/End: Original strand, 2566565 - 2566679
Alignment:
Q  174 agtcaattatattcttatcgcatggtcaacctaaaagtactaatgggattggactcttatttgatgattttgttagcatgaaacaaccacttcctgcata 273  Q
    ||||||| | ||||||||||| ||  || |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||   |||    
T  2566565 agtcaataacattcttatcgcgtgaccatcctaaaagtacttattggattgaactcttatttgatgattttgttagcatgaaacaaccacttcccaaata 2566664  T
Q  274 agcactctttgtcat 288  Q
    | ||||| |||||||    
T  2566665 aacactccttgtcat 2566679  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 2593378 - 2593427
Alignment:
Q  216 atgggattggactcttatttgatgattttgttagcatgaaacaaccactt 265  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2593378 atgggattggactcttatttgatgattttgttagcatgaaagaaccactt 2593427  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 2635550 - 2635627
Alignment:
Q  350 ctaaaaaattgggacgtttttcaagcatcttcgatgcgagcgtttgtctaaagagttgttttctcttgatctttgggc 427  Q
    |||||||| |||||| |||||||||| |||||||||||||||||||||||| | |  ||||| |||||||| ||||||    
T  2635550 ctaaaaaaatgggacatttttcaagcgtcttcgatgcgagcgtttgtctaaggcgacgttttttcttgatcattgggc 2635627  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 2568238 - 2568169
Alignment:
Q  96 cttattgaagtagtcttgttcaacctcttatttgaaaatattattaatattgttaaatgtcaattttgatt 166  Q
    ||||||||||||||||  ||| ||||||||||||| |||  ||||||||||||| |||||| |||||||||    
T  2568238 cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgtt-aatgtcgattttgatt 2568169  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 2595706 - 2595669
Alignment:
Q  97 ttattgaagtagtcttgttcaacctcttatttgaaaat 134  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  2595706 ttattgaagaagtcttgttctacctcttatttgaaaat 2595669  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 2640572 - 2640535
Alignment:
Q  97 ttattgaagtagtcttgttcaacctcttatttgaaaat 134  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  2640572 ttattgaagaagtcttgttctacctcttatttgaaaat 2640535  T

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