View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_28 (Length: 430)

Name: NF17651_high_28
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_28
NF17651_high_28
[»] chr1 (3 HSPs)
chr1 (1-414)||(15587684-15588104)
chr1 (196-233)||(26070937-26070974)
chr1 (207-239)||(25694424-25694456)
[»] chr5 (2 HSPs)
chr5 (196-235)||(27488459-27488498)
chr5 (196-233)||(13789730-13789767)
[»] chr7 (1 HSPs)
chr7 (205-234)||(44682563-44682592)
[»] chr3 (2 HSPs)
chr3 (196-233)||(53441905-53441942)
chr3 (205-233)||(12747819-12747847)
[»] chr2 (16 HSPs)
chr2 (200-233)||(5109361-5109394)
chr2 (196-233)||(40430779-40430816)
chr2 (196-237)||(45571142-45571183)
chr2 (196-237)||(45574809-45574850)
chr2 (196-237)||(45578476-45578517)
chr2 (196-237)||(45582143-45582184)
chr2 (196-237)||(45585810-45585851)
chr2 (196-237)||(45589477-45589518)
chr2 (196-237)||(45593144-45593185)
chr2 (196-237)||(45596811-45596852)
chr2 (196-237)||(45600478-45600519)
chr2 (196-237)||(45604145-45604186)
chr2 (196-237)||(45607812-45607853)
chr2 (196-237)||(45611479-45611520)
chr2 (196-237)||(45615146-45615187)
chr2 (197-233)||(11794563-11794599)
[»] chr8 (1 HSPs)
chr8 (205-233)||(8793841-8793869)
[»] chr4 (1 HSPs)
chr4 (205-233)||(17236891-17236919)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 15588104 - 15587684
Alignment:
Q  1 tgcagttgggtctgatgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588104 tgcagttgggtctgatgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattaga 15588005  T
Q  101 tgtcgaatcttggacgatttttcttttggttttgatgatttgcttttacgctctacnnnnnnnnnnnn--------tagtttttaagaagagacgatatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||| || || |     
T  15588004 tgtcgaatcttggacgatttttcttttggttttgatgatttgcttttacgctctacaaaaacaaaaacaaaaaaaatagtttttaagaagaaac-atgtc 15587906  T
Q  193 gatagtaaactgtttcttataaataggaccggagagagtatatgcaaaccttctggtggctgggtaggtttctctgctgctccagatgggtttgttgatt 292  Q
    | |||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||    
T  15587905 ggtagtaaaccgtttcttataaataggaccggaggcagtatatgcaaaccttctgttggctgggtaggtttctctgctcctccaggcgggtttgttgatt 15587806  T
Q  293 tatattcattcatctgcataaaatttaaaattccacacataataaggctttatgataaagaattaaaaactaattaaatgataatatataagagattaac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15587805 tatattcattcatctgcataaaatttaaaattccacacataataaggctttatgataaagaattaaaaactaattaaatgataatatataagagattaac 15587706  T
Q  393 gaaaatagtacccagcttggtg 414  Q
    ||||||||||||||||||||||    
T  15587705 gaaaatagtacccagcttggtg 15587684  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 26070937 - 26070974
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  26070937 agtaaaatgtttcttataaataagaccggagagagtat 26070974  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 25694424 - 25694456
Alignment:
Q  207 tcttataaataggaccggagagagtatatgcaa 239  Q
    |||||||||||||||||||| ||||||||||||    
T  25694424 tcttataaataggaccggagggagtatatgcaa 25694456  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 27488459 - 27488498
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatat 235  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  27488459 agtaaattgtttcttatatataggaccggagagagtatat 27488498  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 13789767 - 13789730
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13789767 agtaaaatgtttcttataaataggaccggagggagtat 13789730  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 44682592 - 44682563
Alignment:
Q  205 tttcttataaataggaccggagagagtata 234  Q
    ||||||||||||||||||||||||||||||    
T  44682592 tttcttataaataggaccggagagagtata 44682563  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 53441942 - 53441905
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  53441942 agtaaaatgtttcttataaataggaccggagggagtat 53441905  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 12747819 - 12747847
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  12747819 tttcttataaataggaccggagagagtat 12747847  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 5109394 - 5109361
Alignment:
Q  200 aactgtttcttataaataggaccggagagagtat 233  Q
    |||| |||||||||||||||||||||||||||||    
T  5109394 aactttttcttataaataggaccggagagagtat 5109361  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 40430779 - 40430816
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40430779 agtaaattgtctcttataaataggaccggagagagtat 40430816  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45571142 - 45571183
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45571142 agtaaattgtttcttatatataggaccggagggagtatatgc 45571183  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45574809 - 45574850
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45574809 agtaaattgtttcttatatataggaccggagggagtatatgc 45574850  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45578476 - 45578517
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45578476 agtaaattgtttcttatatataggaccggagggagtatatgc 45578517  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45582143 - 45582184
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45582143 agtaaattgtttcttatatataggaccggagggagtatatgc 45582184  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45585810 - 45585851
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45585810 agtaaattgtttcttatatataggaccggagggagtatatgc 45585851  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45589477 - 45589518
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45589477 agtaaattgtttcttatatataggaccggagggagtatatgc 45589518  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45593144 - 45593185
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45593144 agtaaattgtttcttatatataggaccggagggagtatatgc 45593185  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45596811 - 45596852
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45596811 agtaaattgtttcttatatataggaccggagggagtatatgc 45596852  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45600478 - 45600519
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45600478 agtaaattgtttcttatatataggaccggagggagtatatgc 45600519  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45604145 - 45604186
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45604145 agtaaattgtttcttatatataggaccggagggagtatatgc 45604186  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45607812 - 45607853
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45607812 agtaaattgtttcttatatataggaccggagggagtatatgc 45607853  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45611479 - 45611520
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45611479 agtaaattgtttcttatatataggaccggagggagtatatgc 45611520  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45615146 - 45615187
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45615146 agtaaattgtttcttatatataggaccggagggagtatatgc 45615187  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 11794563 - 11794599
Alignment:
Q  197 gtaaactgtttcttataaataggaccggagagagtat 233  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  11794563 gtaaaatgtttcttataaataggaccggagggagtat 11794599  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 8793841 - 8793869
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  8793841 tttcttataaataggaccggagagagtat 8793869  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 17236891 - 17236919
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  17236891 tttcttataaataggaccggagagagtat 17236919  T

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