View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_29 (Length: 428)
Name: NF17651_high_29
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 43828343 - 43828510
Alignment:
| Q |
16 |
tatattgtgactcaaacgcttagtgtttctttcctacaccaccttcttcacattcctctttcttgtttctatatgtgctttacagcaacaattatattga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
43828343 |
tatattgtgactcaaacgcttagtgtttctttcctacaccaccttcttcacattcctctttcttgtttctatatgtgctttacaacaataattatattga |
43828442 |
T |
|
| Q |
116 |
aaccacgtttttactttgaaaatattttgttgcacattggagcaccacgtcgtacacctcaatctgta |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43828443 |
aaccacgtttttactttgaaaatattttgttgcacattggagcaccacgtcgtacacctcaatctgta |
43828510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 253 - 417
Target Start/End: Original strand, 43828580 - 43828744
Alignment:
| Q |
253 |
tatcaatgcatttattaaacttggttgttgatggtatgtgcagagattttgcattgcatggctctgtagctagttaactgaatatgagaggaataatggg |
352 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43828580 |
tatcaatgcatttattaaacttgtttgttgatggtatgtgcagagattttgcattgcatggctctgtagctagttaattgaatatgagaggaataatggg |
43828679 |
T |
|
| Q |
353 |
aacttctcctcgttctgttgaagctagacatcgtttgccttcatccatgtgagttccttaatttt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43828680 |
aacttctcctcgttctgttgaagctagacatcgtttgccttcatccatgtgagttccttaatttt |
43828744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University