View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_3 (Length: 645)
Name: NF17651_high_3
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Complemental strand, 18832161 - 18831561
Alignment:
| Q |
1 |
atgtgtgtctgcacttagattcaaggacaacttttgaaggattcgagaataagcttcacaaatggaccaccacttttttaaatgatagagaaatggtaac |
100 |
Q |
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| T |
18832161 |
atgtgtgtctgcacttagattcaaggacaacttttgaaggattcgagaataagcttcacaaaaggaccaccacttttttaaatgatagagaaatggtaac |
18832062 |
T |
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| Q |
101 |
ctcttgtgtgtgtgggggagatgcatcaacttaggannnnnnn-gcatgtactacttttttcggctatcgtgttatcagtacaaagtgtcggccatcgtt |
199 |
Q |
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| T |
18832061 |
ctcttgtgtgtgtggaggagatgcatcaacttaggattttttttgcatgtactactttttttggttatcgtgttatcagtacaaagtgtcggccatcgtt |
18831962 |
T |
|
| Q |
200 |
tatccatgattaatcttcgtcgagtaatctgtgagacactgacacagaacatggaattattgtatttgcaatgttgaataatagctattagctctatact |
299 |
Q |
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| T |
18831961 |
tattgatgattaatcttcgtcgagtaatatgtgagagattgacacagaacatggaataattgtatttgcaatgttgaataatagctattagctccatact |
18831862 |
T |
|
| Q |
300 |
ttgggagtccctcactattatttcagatgctatccattatgtttatacaatgcatttgaaaaacaacacattgaagactcaattaaccagcccacattct |
399 |
Q |
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| T |
18831861 |
ttgggagtccctcactattatttcagatgctatccattatgtttatacaatgcatttgaaaaacaacacattgaagactcaattaaccagcccacattct |
18831762 |
T |
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| Q |
400 |
gcacataaaaatctctacctattataaatttctacgctttactcacccataatccaaggttattttaatctttgaccaattcaactaacaactatctagt |
499 |
Q |
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| T |
18831761 |
gcacataaaaatctctacctattataaatttctacgctttactcacccataatccaaggttattttaatctttgaccaattcaactaacaactatctagt |
18831662 |
T |
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| Q |
500 |
caaatttcactgaatgaggtcggctacatggatcagacgtcgatatcatattcatatccaacacattaatttttaaacctttcttaataatttttctaat |
599 |
Q |
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| T |
18831661 |
caaatttcactaaatgaggtcggctacatggatcagacgttgatatcatattcatatccaacacattaatttttagatctttcttaataatttttctaat |
18831562 |
T |
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| Q |
600 |
a |
600 |
Q |
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| T |
18831561 |
a |
18831561 |
T |
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