View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_30 (Length: 427)
Name: NF17651_high_30
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 25702908 - 25703318
Alignment:
| Q |
1 |
acagcgttcactgcatcatcatgagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaataca |
100 |
Q |
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| T |
25702908 |
acagcgttcactgcatcatcatgagctataatcgattccatacacttgaaatccgtaacgcgccaaactttgagagttttatcccacgaacctgaataca |
25703007 |
T |
|
| Q |
101 |
ataacccttcttcttggtccaaactcagactcgaaacagcgtcgaaatgcttcaccttcactgtgtttctccgtcgccggacttctacgtagttctttgg |
200 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25703008 |
acaacccttcttcttgatccaaactcagactcgaaacagcgtcgaaatgcttcaccttcacggtgtttctccgtcgccggacttctacgtagttctttgg |
25703107 |
T |
|
| Q |
201 |
attcatcgagcttttgacatagtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaactctgattttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25703108 |
attcatcgagcttttgacatagtctttgaaagttggtaagcttccaatacgcttatgatttctagaattttttgaagaaattttccaaaccctgattttt |
25703207 |
T |
|
| Q |
301 |
ccatcttgatgaccggtgaagatgtttccttcggatataacaatggttttgaccaaaccactacttgatttaaaaccggtataatctttaagttctttcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25703208 |
ccatcttgatgaccggtgaagatgtttccttcggatataacaatggatttgaccaaaccactacttgatttaaaaccggtataatctttaagttctttcc |
25703307 |
T |
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| Q |
401 |
acacccctatg |
411 |
Q |
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|||||| |||| |
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| T |
25703308 |
acacccttatg |
25703318 |
T |
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