View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_31 (Length: 423)

Name: NF17651_high_31
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_31
NF17651_high_31
[»] chr2 (1 HSPs)
chr2 (18-413)||(17445731-17446126)
[»] chr6 (9 HSPs)
chr6 (24-413)||(33414075-33414469)
chr6 (60-409)||(33351174-33351529)
chr6 (23-197)||(31565151-31565328)
chr6 (21-144)||(33292802-33292925)
chr6 (21-151)||(33383799-33383929)
chr6 (24-106)||(33269359-33269442)
chr6 (238-303)||(31565346-31565411)
chr6 (73-144)||(33258099-33258170)
chr6 (58-100)||(31567426-31567468)
[»] scaffold0428 (1 HSPs)
scaffold0428 (73-144)||(2220-2291)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 17445731 - 17446126
Alignment:
Q  18 aatataagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17445731 aatataagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtga 17445830  T
Q  118 aatatttggtgaggcaaagtatagctgctattggagagtttaaagtgcggcgttttgttaggttcactcccggagaaacagttcaaaaagaaacagccat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445831 aatatttggtgaggcaaagtatagctgctattggagagtttaaagtgcggcgttttgttaggttcactcccggagaaacagttcaaaaagaaacagccat 17445930  T
Q  218 atctgcatagcttactaggctttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttgacacagaaatctggt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17445931 atctgcatagcttactaggctttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttgaaacagaaatctggt 17446030  T
Q  318 tcttcataataaccgaatgttgattaggcgcggacacattttactgatctgtatctgtattgaatatatgaggactgaattttgtgtaattctctg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17446031 tcttcataataaccgaatgttgattaggcgcggacacattttaccgatctgtatctgtattgaatacatgaggactgaattttgtgtaattctctg 17446126  T

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Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 24 - 413
Target Start/End: Complemental strand, 33414469 - 33414075
Alignment:
Q  24 agagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtgaaatatt 123  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||  ||||||| | |    
T  33414469 agagagaaaattgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagact 33414370  T
Q  124 tggtgaggcaaagtatagctgctattggagagt---ttaaagtgcggcgttttgttaggttcactcccggagaaacagttcaaaaagaaacagccatatc 220  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |    
T  33414369 tggtgaggcaaagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaacagttcaaaaagaaacagccatacc 33414270  T
Q  221 tgcatagcttactaggctttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttgacacagaaatctggttct 320  Q
     ||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  33414269 agcatagcttactaggttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttgaaacagaaatctgcttct 33414170  T
Q  321 tcataataaccgaatgttgattaggcgcggacacattttactgatctgtatctgtattga--atatatgaggactgaattttgtgtaattctctg 413  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  33414169 tcataataaccaaatgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaattttgtgtaattctctg 33414075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 60 - 409
Target Start/End: Complemental strand, 33351529 - 33351174
Alignment:
Q  60 ttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtgaaatatttggtgaggcaaagtatagctgctattggagagt--- 156  Q
    |||||||||||||||||||||| ||| ||||| |||||||| |||||  ||  ||||||| | |||||||||||||||||||||| ||||||||||        
T  33351529 ttaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaaca 33351431  T
Q  157 ttaaagtgcggcgttttgttaggttcactcccggagaaacagttcaaaaagaaacagccatatctgcatagcttactaggctttcaagacaagtatttg- 255  Q
    |||||| ||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||     
T  33351430 ttaaagcgcggcgttttgttcggttcactctcggaaaaatagttcaaaaagaaacagccataccggcatagcttacaacgctttcaagacaagtatttgt 33351331  T
Q  256 --ttgcattttcataggaagaagtatgcggcagagtgagatcaatttt--gacacagaaatctggttcttcataataaccgaatgttgattaggcgcgga 351  Q
      |||||||||||||||||||||||||| || ||||||||||||||||   | |||||||||| |||||||||||||||| |||||||||||||||||||    
T  33351330 ctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgttcttcataataaccaaatgttgattaggcgcgga 33351231  T
Q  352 cacattttactgatctgtatctgtattgaatata--tgaggactgaattttgtgtaattc 409  Q
    |||||||||||||||||||   ||||||||| ||  ||||||||||||||||||||||||    
T  33351230 cacattttactgatctgta---gtattgaatttacttgaggactgaattttgtgtaattc 33351174  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 31565151 - 31565328
Alignment:
Q  23 aagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtgaaatat 122  Q
    |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||| ||| |     
T  31565151 aagagaaaaaattgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagac 31565250  T
Q  123 ttggtgaggcaaagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 197  Q
    ||||||||||||||||||||||| ||||| |||    |||| ||||||||||||||| |||||||||  |||||||||    
T  31565251 ttggtgaggcaaagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaaca 31565328  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 33292925 - 33292802
Alignment:
Q  21 ataagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtgaaat 120  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||  ||||  |||||     
T  33292925 ataagagagaaaattgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaag 33292826  T
Q  121 atttggtgaggcaaagtatagctg 144  Q
    | |||| |||||||||||||||||    
T  33292825 acttggagaggcaaagtatagctg 33292802  T

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Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 33383929 - 33383799
Alignment:
Q  21 ataagagagaaaattgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcttttcagtgaaat 120  Q
    |||| |||||||||||| |||||||| |||||||||||||||  ||| || |||||| || |||||||||||||||||||||||||  |||||||||||     
T  33383929 ataacagagaaaattgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaag 33383830  T
Q  121 atttggtgaggcaaagtatagctgctattgg 151  Q
    | ||||||||||||||||||||||| |||||    
T  33383829 acttggtgaggcaaagtatagctgccattgg 33383799  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 33269442 - 33269359
Alignment:
Q  24 agagagaaaattgtc-gagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacag 106  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33269442 agagagaaaattgtctgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacag 33269359  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 31565346 - 31565411
Alignment:
Q  238 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttga 303  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  31565346 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttga 31565411  T

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Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 33258170 - 33258099
Alignment:
Q  73 ctcttctagagcagcctttcattaaggatgacagcttttcagtgaaatatttggtgaggcaaagtatagctg 144  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| | |||||||||| |||||||||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctg 33258099  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 31567426 - 31567468
Alignment:
Q  58 ggttaggagagcttgctcttctagagcagcctttcattaagga 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  31567426 ggttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

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Target: scaffold0428 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 2291 - 2220
Alignment:
Q  73 ctcttctagagcagcctttcattaaggatgacagcttttcagtgaaatatttggtgaggcaaagtatagctg 144  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||||| | |||||||||| |||||||||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctg 2220  T

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