View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_34 (Length: 418)
Name: NF17651_high_34
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 54 - 404
Target Start/End: Complemental strand, 40841849 - 40841499
Alignment:
| Q |
54 |
tgacatggtatgatttgattgggtgaaggatatatactcaacaaaactatatgataattaaccattgacataaaatgatccatttgatcacatgtagttg |
153 |
Q |
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| T |
40841849 |
tgacatggtatgatttgattgggtgaaggatatatactcaaccaaactatatgataattaaccattgacataaaatgatccatttgatcacatgtagttg |
40841750 |
T |
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| Q |
154 |
ggaggatggtgcaatgtacgccatggcacctttcccacgggttgtatcatgtatggttattttcggttagctaaaaatttataagatagattggatatta |
253 |
Q |
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| T |
40841749 |
ggaggatggtgcaatgtacgccatggcacctttcccacgggttgtatcatgtatggttattttcggttagctaaaaatttataagatagattggatatta |
40841650 |
T |
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| Q |
254 |
attatagtaaaattatttaccatttaaattatgcaacaagctaattgtagaccatttgtcnnnnnnnnnnnnnnnnnnntagaagttaattgtagaccct |
353 |
Q |
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| T |
40841649 |
attatagtaaaattattaaccatttaaattacgcaacaagctaattgtagaccatttgtcaaaattaaaaagaaaaaaatagaagttaattgtagaccct |
40841550 |
T |
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| Q |
354 |
aagataagataaggcattgataggtttaagtcataaaccgctcgaaaaata |
404 |
Q |
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| T |
40841549 |
aagataagataaggcattgataggtttaagtcataaaccgctcgaaaaata |
40841499 |
T |
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