View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_36 (Length: 412)
Name: NF17651_high_36
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 9199919 - 9199532
Alignment:
| Q |
2 |
gcacagatgaactacaaagttgtatagcactaaagaagagaagaaatttctcaccttatcataaccagagcacaagacattggcggagactgggtccact |
101 |
Q |
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| T |
9199919 |
gcacagatgaactacaaagttgtatagcactaaagaagagaagaaatttctcaccttatcataaccagagcacaagacattggcggagactgggtccact |
9199820 |
T |
|
| Q |
102 |
tcacccatcagttcaacaatgctactcacaatctgnnnnnnnnnnnnnnnnnttcctaaaacatccactccagcttccagacttcaatttaaaagtccaa |
201 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9199819 |
tcacccatcagttcaacaatgctattcacaatctgaaaatcaaaaacaaaaattcctaaaacatccactccagcttccagacttcaatttaaaagtccaa |
9199720 |
T |
|
| Q |
202 |
tccccaatagaaagaggaagacatatatattttcacaatcaatgaactgaaaacacttcttaagatagaaggaggtccaagactcaaatcctgattcctg |
301 |
Q |
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| T |
9199719 |
tccccaatagaaagaggaagacatatatattttcacaatcaatgaactgaaaacacttcttaagatagaaggaggtccaagactcaaatcctgattcctg |
9199620 |
T |
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| Q |
302 |
aatactaacatattgcagagaccgagtgtttcataactaccagtagactactaacattgaggtcagaacattggcactagaagcagggtctaagt |
396 |
Q |
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||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9199619 |
aatactaacatatggcagagagcgagtgtt-------taccagtagactactaacattgcggtcagaacattggcactagaagcagggtctaagt |
9199532 |
T |
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