View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_4 (Length: 633)
Name: NF17651_high_4
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 32905947 - 32905681
Alignment:
| Q |
13 |
gcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttctacaaaacacaaggtttttattgtatactatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905947 |
gcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttctacaaaacacaaggtttttattgtatactatt |
32905848 |
T |
|
| Q |
113 |
tcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaatagggttttaattagtttgagtgaagatagaatgagaaggaagctgaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905847 |
tcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaataggattttaaatagtttgagtgaagatagaatgagaaggaagctgaaga |
32905748 |
T |
|
| Q |
213 |
agagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcactaggtggagcaacaag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32905747 |
agagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcattaggtggagcaacaag |
32905681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 342 - 567
Target Start/End: Complemental strand, 32905620 - 32905393
Alignment:
| Q |
342 |
gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgtt--tgtcatgtgttattaaagtttgcttcttccccatatgtctccagctct |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905620 |
gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgttgttgtcatgtgttattaaagtttgcttcttccccatatgtctccagctct |
32905521 |
T |
|
| Q |
440 |
ttgctcctgcaaaacaacctcacacttaagttgatttttctctcactttgtcttttcagttttacactctccttttctcaagagagcacaaaaagaaaat |
539 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32905520 |
ttgctcctacaaaacaacctcacacttaagttgatttttctctcactttgtcttttcagttttacactctccttttctcaagagagcacaaaaagaaaat |
32905421 |
T |
|
| Q |
540 |
ccgttatgcaaacaactccggtatgtcg |
567 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
32905420 |
ccgttatgcaaacaactccgttatgtcg |
32905393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University