View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_42 (Length: 405)

Name: NF17651_high_42
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_42
NF17651_high_42
[»] chr5 (8 HSPs)
chr5 (11-388)||(38156883-38157259)
chr5 (265-388)||(38178221-38178344)
chr5 (265-388)||(38205445-38205568)
chr5 (276-388)||(38221216-38221329)
chr5 (291-388)||(38167925-38168022)
chr5 (291-388)||(38199082-38199179)
chr5 (180-238)||(38171240-38171298)
chr5 (198-243)||(38221340-38221385)
[»] chr4 (1 HSPs)
chr4 (311-378)||(2995611-2995678)
[»] chr3 (2 HSPs)
chr3 (332-384)||(43246161-43246213)
chr3 (346-379)||(44804565-44804598)
[»] chr1 (2 HSPs)
chr1 (182-243)||(15707556-15707617)
chr1 (313-369)||(2239986-2240042)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 38157259 - 38156883
Alignment:
Q  11 gatgaaacacgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgttatttccacaattcatattagtacgtactattattat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  38157259 gatgaaacacgatcctctttgaaggggtcagggaagaaaaagaagaaactttacgaaaactgttatttccacaattcatattaggac-tattattattat 38157161  T
Q  111 tcaagccattgaatattaagtcttttatccacgcatgcctatttttacgtcctgtcataaaaacaatagtattgtcaatcacaaattgtagaaaataata 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157160 tcaagccattgaatattaagtcttttatccacgcatgcctatttttacgtcctgtcataaaaacaatagtattgtcaatcacaaattgtagaaaataata 38157061  T
Q  211 ggttgttagaattccgctatgctatagtactatagtgcaactatagttgctatcaaacaatactatgtactaatcagcgtattacaaagtacatttacgc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||     
T  38157060 ggttgttagaattccgctatgctatagtactatagtgcaactatagttgctatcaaacaacactatgtactaatcagcgtattacaaaatacacttacgt 38156961  T
Q  311 gacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcattta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156960 gacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcattta 38156883  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 388
Target Start/End: Original strand, 38178221 - 38178344
Alignment:
Q  265 aaacaatactatgtactaatcagcgtattacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgaca 364  Q
    |||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||   || ||||||||||||||||| |    
T  38178221 aaacaacactatgtgctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgata 38178320  T
Q  365 atgcatcttcattaaactcattta 388  Q
    | | ||||||| ||||||||||||    
T  38178321 acggatcttcaataaactcattta 38178344  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 388
Target Start/End: Original strand, 38205445 - 38205568
Alignment:
Q  265 aaacaatactatgtactaatcagcgtattacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgaca 364  Q
    |||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||   || ||||||||||||||||| |    
T  38205445 aaacaacactatgtgctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgata 38205544  T
Q  365 atgcatcttcattaaactcattta 388  Q
    | | ||||||| ||||||||||||    
T  38205545 acggatcttcaataaactcattta 38205568  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 38221329 - 38221216
Alignment:
Q  276 tgtactaatcagcgtattacaaagtacatttacgcgacaatatc-atgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttc 374  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||  ||||||||||| ||||||||| ||| |||||||||||||| ||||||| ||||||    
T  38221329 tgtactaatcaacgtattactaagtacatttacgtgacaatatatatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttc 38221230  T
Q  375 attaaactcattta 388  Q
    ||||| ||||||||    
T  38221229 attaagctcattta 38221216  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 388
Target Start/End: Complemental strand, 38168022 - 38167925
Alignment:
Q  291 attacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcattta 388  Q
    |||||||||||   ||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  38168022 attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcattta 38167925  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 38199082 - 38199179
Alignment:
Q  291 attacaaagtacatttacgcgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcattta 388  Q
    |||||||||||   ||||| |||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  38199082 attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcattta 38199179  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 38171298 - 38171240
Alignment:
Q  180 tattgtcaatcacaaattgtagaaaataataggttgttagaattccgctatgctatagt 238  Q
    ||||||||||| || |||| ||||  |||||| ||||| ||||||||||||||||||||    
T  38171298 tattgtcaatcccagattgcagaagttaatagcttgttcgaattccgctatgctatagt 38171240  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 38221385 - 38221340
Alignment:
Q  198 gtagaaaataataggttgttagaattccgctatgctatagtactat 243  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||    
T  38221385 gtagaaaataacaggttgttggaattccgctacgctatagtcctat 38221340  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 2995678 - 2995611
Alignment:
Q  311 gacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcatta 378  Q
    ||||| |||||||||||| | | ||||||||||| |||||| |||||||||| ||||||||| |||||    
T  2995678 gacaacatcatgagtttttattagatgttgatgtaaaactagtttacaccgataatgcatctccatta 2995611  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 43246213 - 43246161
Alignment:
Q  332 tggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactca 384  Q
    |||||| || ||| |||||| ||||||||| ||||||||||||||||||||||    
T  43246213 tggatgatgttgtaaaactagtttacaccgtcaatgcatcttcattaaactca 43246161  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 379
Target Start/End: Complemental strand, 44804598 - 44804565
Alignment:
Q  346 aaactattttacaccgacaatgcatcttcattaa 379  Q
    |||||||||||||||| |||||||||||||||||    
T  44804598 aaactattttacaccgtcaatgcatcttcattaa 44804565  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 15707556 - 15707617
Alignment:
Q  182 ttgtcaatcacaaattgtagaaaataataggttgttagaattccgctatgctatagtactat 243  Q
    |||||||||||| |||||| ||||||  || |||||  ||||||||||||||||||| ||||    
T  15707556 ttgtcaatcacagattgtaaaaaatagcagtttgttcaaattccgctatgctatagtgctat 15707617  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 2239986 - 2240042
Alignment:
Q  313 caatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgca 369  Q
    ||||||| |||||| ||| | ||||| ||||| |||||| |||||||||||||||||    
T  2239986 caatatcttgagttctcattagatgtcgatgtaaaactagtttacaccgacaatgca 2240042  T

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