View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_50 (Length: 390)
Name: NF17651_high_50
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 32505350 - 32504993
Alignment:
| Q |
18 |
gttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcgtaagcagaactcatacgtaccacccttcaaatgtcatctgcccc |
117 |
Q |
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| T |
32505350 |
gttagcagtacacgtaaatgtacagagagaaacaaaatcaatgtcttgtcgagtcctaagcagaactcatacgtaccacccttcaaatgtcatctgcccc |
32505251 |
T |
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| Q |
118 |
acccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattcagctatgaaattttttaaccattgaggaatcatgcatgataaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32505250 |
acccaattgtcaaaccattcacattgttcttgatcttagcacaattaaagtaattcagctttgaaattttttaaccattgaggaatcatgcatgataaag |
32505151 |
T |
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| Q |
218 |
ggaagggtaatagcaatttaatgagatgagctgtatgataagctagttctgtgattttctaattaagtgctattgttatgcatggttttgagctctgctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
32505150 |
agaagggtaatagcaatttaatgagatgagctgtatgataagctagttctgtgattttctaattaagtgctattgttatgcatggttttgatct---ctt |
32505054 |
T |
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| Q |
318 |
gtatttgattatttgaacccaccctacaacatcacactttaatgtgatagtacccgatttt |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32505053 |
gtatttgattatttgaacccaccctacaacatcacactttaatgtgatagtacccgatttt |
32504993 |
T |
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