View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_54 (Length: 383)
Name: NF17651_high_54
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 3756198 - 3755837
Alignment:
| Q |
19 |
gtatgacctcataatgaatcaatgaagaatttgagtactttatttccttatttagtgcttggtgatattcgacacctatcacactagaacccatattctc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3756198 |
gtatgacctcataaggaatcaatgaagaatttgagtactttatttccttatttagtgcttggtgatattcgacacctatcacactagaacccatattctc |
3756099 |
T |
|
| Q |
119 |
tctaata--gcgataaccacacagtcatacattttaaattctttgatcttaattgttctacctgtatct-aactttgcaaaataggtc----acaagaag |
211 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
3756098 |
tctaatatagcgataaccacacagtcacacattttaaattctttgatcataattgtgctacttgtatctcaactttgcaaaataggtccaaaacaagaag |
3755999 |
T |
|
| Q |
212 |
ctaaaacttgtaccgtttggtcaagatcgaacaatttagacatgcaaacaattcgtatacgctcttgttgacactggataggtacttgtttatgaattga |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755998 |
ctaaagcttgtaccgtttggtcaagatcgaacaatttagacatgcaaacaatttgtatacgctcttgttgacactggataggtacttgtttatgaattga |
3755899 |
T |
|
| Q |
312 |
attttggaatttcaggtcttccaaggaaacaagaaattcaactttctacaaatttgcctatg |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755898 |
attttggaatttcaggtcttccaaggaaacaagaaattcaactttctacaaatttgcctatg |
3755837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 3293423 - 3293387
Alignment:
| Q |
19 |
gtatgacctcataatgaatcaatgaagaatttgagta |
55 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3293423 |
gtatgacctcataataaatcaatgaagaatttcagta |
3293387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University