View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_58 (Length: 373)
Name: NF17651_high_58
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 32809286 - 32809151
Alignment:
| Q |
181 |
acttcatctatcatttatctccctctcaccaatcttacaaatatatataccacaatgtgagagactcacatggtcaagttattttgcttcaacctttttt |
280 |
Q |
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| T |
32809286 |
acttcatctatcatttatctccctctcaccaatcttacaaatatatataccacaatgtgagagactcacatggtcaagttattttgcttcaacct-tttt |
32809188 |
T |
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| Q |
281 |
ctcaagtatggaggagcctcacgacaaggagaacaca |
317 |
Q |
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| T |
32809187 |
ctcaagtatggaggagcctcacgacaaggagaccaca |
32809151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32809464 - 32809348
Alignment:
| Q |
1 |
cacaacccacccacttcacttatttattccacttcttacatctcaaacttgtaaactcccact------catttccagttttctttcactcattccctta |
94 |
Q |
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| T |
32809464 |
cacaacccacccacttcacttatttattccacttcttacatctcaaact--taacctctcactcacttccacttccagttttctttcactcattccctta |
32809367 |
T |
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| Q |
95 |
ctcacaaacaaacccttaa |
113 |
Q |
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| T |
32809366 |
ctcacaaacaaaaccttaa |
32809348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 32269385 - 32269294
Alignment:
| Q |
15 |
ttcacttatttattccacttcttacatctcaaacttgtaaactcccactcatttccagttttctttcactcattcccttactcacaaacaaa |
106 |
Q |
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| T |
32269385 |
ttcacttatatattccacttctttcatctcaaacttgtaaccttgcactcacttccaattttctttcactcattcccttactcacaaacaaa |
32269294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 32269165 - 32269040
Alignment:
| Q |
260 |
tattttgcttcaaccttttttctcaagtatggaggagcctcacgacaaggagaacac-aca----tg-------gtgtgcaatgaccgtcaaggctgcaa |
347 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| ||||| |
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| T |
32269165 |
tatttttcttaaaccttttttctcaagtatggaggagcctcacgacaaagagaacacaacaccgttggaggcaagtgtgcaatgaccgtcaaggttgcaa |
32269066 |
T |
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| Q |
348 |
ggttgggcatgggtggaatcggtaaa |
373 |
Q |
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| T |
32269065 |
ccttgggcatgggtggaatcggtaaa |
32269040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 373
Target Start/End: Complemental strand, 32275452 - 32275348
Alignment:
| Q |
282 |
tcaagtatggaggagcctcacgacaaggagaacaca-------------catggtgtgcaatgaccgtcaaggctgcaaggttgggcatgggtggaatcg |
368 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32275452 |
tcaagtatggaggagcctcacgacaaggagaacccaacaccgttggaggcaaggtgtgcaatgaccgtcaaggctgcaagcttgggcatgggtggaatcg |
32275353 |
T |
|
| Q |
369 |
gtaaa |
373 |
Q |
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||||| |
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|
| T |
32275352 |
gtaaa |
32275348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 32269221 - 32269175
Alignment:
| Q |
181 |
acttcatctatcatttatctccctctcaccaatcttacaaatatata |
227 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
32269221 |
acttcatctatcatttatctccctctcaccagtcttacaaatttata |
32269175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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