View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_60 (Length: 368)
Name: NF17651_high_60
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 42354604 - 42354946
Alignment:
| Q |
18 |
ttacacaccccaccattttgtt---aagtctttatcttctacattacaagtttttcatgaaaacttgtgagaaaaaccatatctttgtggatgaagtttt |
114 |
Q |
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| T |
42354604 |
ttacacaccccaccattttttttttaagtctctatcttctacattacaagtttttcatgaaaacttgtgaaaaaaaccatatctttgtggatgaagtttt |
42354703 |
T |
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| Q |
115 |
ttagtctttttctgaactctttaaacaacaatatttgtcatgtttcttgctgagtaatcaataggtatattttattcatcaaatgaaaggtggaagtcaa |
214 |
Q |
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| T |
42354704 |
ttagtctttttctgaactctttaaacaacaatatttgtcatgtttcttgctgagttatcaataggtatattttattcatcaaatgaaaggtggaagtcaa |
42354803 |
T |
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| Q |
215 |
caagagtatgtgatgtctcaagtccaaccaacattattagtaaaaattcaacctttttggttataaaat-aagtttttgagtctctaggtatcatggggt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42354804 |
caagagtatgtgatgtctcaagtccaaccaacattattagtaaaaattcaacctttttggttataaaataaagtttttgagtctctaggtatcatggggt |
42354903 |
T |
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| Q |
314 |
tctcaagaaaacaattctcaacctaccttttgaatactatttt |
356 |
Q |
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| T |
42354904 |
tctcaagaaaacaattctcaacctaccttttgaatactatttt |
42354946 |
T |
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