View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_65 (Length: 353)
Name: NF17651_high_65
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_65 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 42247734 - 42248082
Alignment:
| Q |
7 |
aaaattgggcacaccatatttatatcttacaataatagaggtattaatttgatgtgaattgtctcacatcaaattaatactacaaggggttaagnnnnnn |
106 |
Q |
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| T |
42247734 |
aaaattgggcacaccatatttatatcttacaataatagaggtattaatttgatttgaattgtctcacatcaaattaatactacaaggggttaagaaataa |
42247833 |
T |
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| Q |
107 |
ntatataagctagtaaagagacgtgtttatttgctagatcaactaataaaatgtgtcttagtgagtaggcatgatataatgtcaatatcagaaatcattt |
206 |
Q |
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| T |
42247834 |
ataaataagctagtaaagagacgtgtttatttgctagatcaactaataaaatgtgtcttagtgagtaggcatgatctaatgtcaatatcagaaatcattt |
42247933 |
T |
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| Q |
207 |
gatgatacaaaattgaatgcggtgtccttcaccaaccactggccagtgtattcaagatatatatctaagactagatccattcaaattgatac----atat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
42247934 |
gatgatacaaaattgaatgcggtgtccttcaccaaccactggccagtgtattcaagatatatatct-agactagatccattc-aattgatacatatatat |
42248031 |
T |
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| Q |
303 |
atacgtctaagaaatagtatatagttgactatacatgtgatagttctccct |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42248032 |
atacgtctaagaaatagtatatagttgactatacatgtgatagttctccct |
42248082 |
T |
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