View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_68 (Length: 340)

Name: NF17651_high_68
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_68
NF17651_high_68
[»] chr4 (14 HSPs)
chr4 (18-247)||(5050447-5050675)
chr4 (155-247)||(3067600-3067692)
chr4 (120-247)||(45891817-45891945)
chr4 (160-246)||(52803243-52803329)
chr4 (151-247)||(4059100-4059196)
chr4 (128-247)||(14295046-14295165)
chr4 (128-247)||(14311095-14311214)
chr4 (128-247)||(14313296-14313415)
chr4 (149-246)||(18371163-18371260)
chr4 (151-246)||(31040304-31040400)
chr4 (124-181)||(37861280-37861337)
chr4 (178-247)||(43967986-43968055)
chr4 (195-247)||(36622116-36622168)
chr4 (124-181)||(46963835-46963892)
[»] scaffold0192 (1 HSPs)
scaffold0192 (120-247)||(13412-13539)
[»] chr3 (14 HSPs)
chr3 (120-247)||(41242138-41242265)
chr3 (149-247)||(16053084-16053182)
chr3 (149-239)||(16037596-16037686)
chr3 (149-239)||(16041152-16041242)
chr3 (121-246)||(17517840-17517965)
chr3 (127-240)||(11076905-11077018)
chr3 (149-247)||(31229711-31229809)
chr3 (149-213)||(28389449-28389513)
chr3 (135-245)||(39933360-39933469)
chr3 (195-246)||(37820821-37820872)
chr3 (193-246)||(50744744-50744797)
chr3 (124-175)||(4127359-4127410)
chr3 (124-175)||(50129155-50129206)
chr3 (124-175)||(51390374-51390425)
[»] chr6 (6 HSPs)
chr6 (120-246)||(12185666-12185792)
chr6 (120-246)||(9456168-9456294)
chr6 (149-247)||(3441206-3441304)
chr6 (149-247)||(25070374-25070472)
chr6 (124-246)||(10068206-10068326)
chr6 (197-247)||(10483607-10483657)
[»] chr5 (6 HSPs)
chr5 (124-245)||(35075870-35075991)
chr5 (149-247)||(39743465-39743563)
chr5 (138-245)||(7802007-7802113)
chr5 (123-180)||(5735964-5736021)
chr5 (173-247)||(31559096-31559170)
chr5 (120-181)||(31558176-31558237)
[»] chr8 (5 HSPs)
chr8 (150-247)||(25267019-25267116)
chr8 (133-230)||(39907977-39908074)
chr8 (154-246)||(2233861-2233953)
chr8 (151-223)||(32162808-32162880)
chr8 (127-183)||(11190545-11190601)
[»] chr7 (7 HSPs)
chr7 (161-246)||(33902215-33902300)
chr7 (120-246)||(24211286-24211411)
chr7 (195-245)||(46603750-46603800)
chr7 (160-246)||(9603492-9603578)
chr7 (160-246)||(9831063-9831149)
chr7 (198-246)||(40291213-40291261)
chr7 (198-246)||(45996496-45996544)
[»] scaffold0402 (1 HSPs)
scaffold0402 (121-247)||(2999-3123)
[»] chr1 (8 HSPs)
chr1 (121-247)||(19339936-19340060)
chr1 (150-247)||(46298562-46298659)
chr1 (162-246)||(49423364-49423448)
chr1 (113-240)||(31501006-31501133)
chr1 (143-246)||(23392696-23392800)
chr1 (149-246)||(25808472-25808569)
chr1 (124-175)||(34967742-34967793)
chr1 (126-183)||(47449243-47449300)
[»] chr2 (8 HSPs)
chr2 (120-246)||(11152212-11152344)
chr2 (156-246)||(2126179-2126269)
chr2 (124-240)||(5578025-5578141)
chr2 (199-247)||(15081331-15081379)
chr2 (124-161)||(4762065-4762102)
chr2 (124-173)||(11252647-11252696)
chr2 (124-188)||(2674359-2674423)
chr2 (151-247)||(11617277-11617373)
[»] scaffold1786 (1 HSPs)
scaffold1786 (143-236)||(398-491)
[»] scaffold0007 (1 HSPs)
scaffold0007 (124-243)||(176183-176302)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 5050675 - 5050447
Alignment:
Q  18 ctctcatctctgtaagtcaccgatattttgagtttagatccgcccctgatcagataccattgtaagaatgaggtgcacattaaaaaattaaaatcaaaag 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  5050675 ctctcatctctgtaagtcaccaatattttgagtttagatccgcccctgatcagataccattgtaagaatgatgtgcacattcaaaaattaaaatcaaaag 5050576  T
Q  118 aagtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaa 217  Q
    | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5050575 a-gtagtgttaacttgtgcccttatggcacaagttaagaatctaaaaatagaattaaatcataaattatgcctcaagaagataagattttaaatttctaa 5050477  T
Q  218 aatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||||||||| ||||||||||    
T  5050476 aatattaaatgcacaattttcaataaaatg 5050447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 3067600 - 3067692
Alignment:
Q  155 gaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||  |||||||||||||||||| |||  | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  3067600 gaatctaaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatg 3067692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 45891945 - 45891817
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatc-tcaagaagataagattttaaatttctaaa 218  Q
    |||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||| || | || |  | || |||||||||||||||| ||      
T  45891945 gtagtgttaacttgtgccctaagggcacaagttaagaatctaaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttagg 45891846  T
Q  219 atattaaatgcacaatttccaataaaatg 247  Q
    | ||| |||||||||| ||||| ||||||    
T  45891845 acattgaatgcacaatctccaacaaaatg 45891817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 52803243 - 52803329
Alignment:
Q  160 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||||| ||||||| |||||||| ||||| || | |||||||||||||||||||||||||| ||| |||| ||||| ||||||||    
T  52803243 taaaaataaaattaaaacataaattttatcttaaaaggataagattttaaatttctaaaatatgaaacgcacgatttctaataaaat 52803329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 4059100 - 4059196
Alignment:
Q  151 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||| || |||||| ||||||| |||||||| | |||  | ||||||| |||||||||||||||||||| |||| ||||||||| |||||||||    
T  4059100 ttaagaaactcaaaataaaattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatg 4059196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 14295165 - 14295046
Alignment:
Q  128 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 227  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14295165 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14295066  T
Q  228 gcacaatttccaataaaatg 247  Q
     |||||||||| ||||||||    
T  14295065 tcacaatttcctataaaatg 14295046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 14311214 - 14311095
Alignment:
Q  128 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 227  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14311214 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14311115  T
Q  228 gcacaatttccaataaaatg 247  Q
     |||||||||| ||||||||    
T  14311114 tcacaatttcctataaaatg 14311095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 14313415 - 14313296
Alignment:
Q  128 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 227  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14313415 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14313316  T
Q  228 gcacaatttccaataaaatg 247  Q
     |||||||||| ||||||||    
T  14313315 tcacaatttcctataaaatg 14313296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 18371260 - 18371163
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||||||  ||||||  ||||||||  ||||||| ||||| || || ||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  18371260 agttaagaacgtaaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaat 18371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 31040400 - 31040304
Alignment:
Q  151 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaa-atgcacaatttccaataaaat 246  Q
    ||||||| ||||||||  |||||||  ||||||| ||| | |  ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  31040400 ttaagaaactaaaaatgaaattaaaatataaattttattttataaagataagattttaaatttctaaaacattaatatgcataatttccaataaaat 31040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 37861337 - 37861280
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 181  Q
    |||||||||||||||||| | ||| ||||||| ||||||||| ||||||||| |||||    
T  37861337 tgttaacttgtgcccttaaggcacaagttaaggatctaaaaaaagaattaaaacataa 37861280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 43967986 - 43968055
Alignment:
Q  178 ataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||| |||  | |||||||||||| |||||| || ||||||||||||||||||| ||| ||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatg 43968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 36622116 - 36622168
Alignment:
Q  195 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||| ||||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatg 36622168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 46963835 - 46963892
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 181  Q
    |||||||||||| ||||| | ||| ||||||| ||||||||| ||||||||| |||||    
T  46963835 tgttaacttgtggccttaaggcacaagttaaggatctaaaaaaagaattaaaacataa 46963892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 13539 - 13412
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 219  Q
    |||||| ||||||||||||| | | ||| ||||||||||||||||||  |||||||||||||||||| |||  | |||||||||||||||||||||| ||    
T  13539 gtagtgctaacttgtgccctaagggcacaagttaagaatctaaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaa 13440  T
Q  220 tattaaatgcacaatttccaataaaatg 247  Q
    |||| |||||||||||||||| ||||||    
T  13439 tattgaatgcacaatttccaacaaaatg 13412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 41242138 - 41242265
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 219  Q
    |||||||||| ||||||| | | | ||| |||||| ||||||||||||||||||||||||||||||| ||   | |||||||||||| ||||||||||||    
T  41242138 gtagtgttaatttgtgccgtaagggcacaagttaaaaatctaaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaa 41242237  T
Q  220 tattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||||||||||| ||||||    
T  41242238 tattaaatgcacaatttccaacaaaatg 41242265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 16053182 - 16053084
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||||||||| | ||||||||||||||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  16053182 agttaagaatctaaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatg 16053084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 16037686 - 16037596
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttcca 239  Q
    |||||||||||||||||| ||||||||||| ||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||    
T  16037686 agttaagaatctaaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttcca 16037596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 16041242 - 16041152
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttcca 239  Q
    ||||| |||||||||||| ||||||||||||||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||    
T  16041242 agttatgaatctaaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttcca 16041152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 246
Target Start/End: Original strand, 17517840 - 17517965
Alignment:
Q  121 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 220  Q
    ||||||| | ||||||||| | ||||| |||||||||||||||| |  ||||||||||||||||||||||  | ||||||||| ||||||||| || |||    
T  17517840 tagtgttgatttgtgccctaaggacacaagttaagaatctaaaattgaaattaaatcataaattatatcttgaaaagataagaatttaaatttttagaat 17517939  T
Q  221 attaaatgcacaatttccaataaaat 246  Q
    ||| ||||||||||||| || |||||    
T  17517940 attgaatgcacaatttctaacaaaat 17517965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 11076905 - 11077018
Alignment:
Q  127 taacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaa 226  Q
    ||||||||| | ||| | ||| |||||||||||||||||| |||||||| |||||||| | |||  | || |||||||||||||||||||||||||| |     
T  11076905 taacttgtgtcgttaaggcacaagttaagaatctaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgat 11077004  T
Q  227 tgcacaatttccaa 240  Q
    ||||||||||||||    
T  11077005 tgcacaatttccaa 11077018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 31229711 - 31229809
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||  ||||||||||| |||| ||||||||||||||  | |  |||||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  31229711 agttaagaagttaaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatg 31229809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 28389513 - 28389449
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaattt 213  Q
    ||||| ||||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||    
T  28389513 agttaggaatctaaaaatagaattaaatcataaattatatcttgaaaagataatattttaaattt 28389449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 39933469 - 39933360
Alignment:
Q  135 gcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaat 234  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||| | | |  | ||||||| | ||||||||| || |||||| ||||||||||    
T  39933469 gcccttacggcacaagttaagaatctaaaaatagaattaaatcataaattgtgttttgaaaagataa-aatttaaatttttagaatattgaatgcacaat 39933371  T
Q  235 ttccaataaaa 245  Q
    || ||| ||||    
T  39933370 tttcaacaaaa 39933360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 37820821 - 37820872
Alignment:
Q  195 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||||||||||||||||||||||||| ||  |||||| |||||||||||||||    
T  37820821 aagataagattttaaatttctaaaacatggaatgcataatttccaataaaat 37820872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 50744744 - 50744797
Alignment:
Q  193 agaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  50744744 agaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaat 50744797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 4127359 - 4127410
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 175  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||  |||||||    
T  4127359 tgttaacttgtacccttatgacacaagttaagaaactaaaaatgtaattaaa 4127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 50129206 - 50129155
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 175  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| ||||||||    
T  50129206 tgttaacttgtgcccttagggcacaagttaagaaactaaaaatggaattaaa 50129155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 51390425 - 51390374
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 175  Q
    |||||||||||||||| | ||||| || ||||||||||||||||| ||||||    
T  51390425 tgttaacttgtgccctaaggacacaagataagaatctaaaaatagtattaaa 51390374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 12185666 - 12185792
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 219  Q
    |||||||||||||||||  ||| ||||| |||||||||| ||||||| ||||||||||||||||||| |||  | ||||||||||||| |||||||| ||    
T  12185666 gtagtgttaacttgtgcttttaagacacaagttaagaatttaaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaa 12185765  T
Q  220 tattaaatgcacaatttccaataaaat 246  Q
    |||| |||||||||||| ||| |||||    
T  12185766 tattgaatgcacaattttcaacaaaat 12185792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 9456168 - 9456294
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 219  Q
    |||||||||||||||||||| |   ||| |||||||||| ||||||| ||||||||| ||||||||| |||  | || ||||||||||||||||||| |     
T  9456168 gtagtgttaacttgtgccctaagagcacaagttaagaatataaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagac 9456267  T
Q  220 tattaaatgcacaatttccaataaaat 246  Q
    |||| |||||||||||||||| |||||    
T  9456268 tattgaatgcacaatttccaacaaaat 9456294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 3441206 - 3441304
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||  |||||||  ||||||| |||||||| |||||  | || ||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  3441206 agttaagaaggtaaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatg 3441304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 25070374 - 25070472
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||  ||||||||||| |||  |||||||| | |||  | |||||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  25070374 agttaagaagataaaaatagaaataagacataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatg 25070472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 10068326 - 10068206
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 223  Q
    |||||||||||||||||| ||||| |||||| ||  |||||||  ||||||| |||||||| | |||  | |  |||| ||||||||||||||||| ||     
T  10068326 tgttaacttgtgcccttaggacacaagttaataaggtaaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatg 10068227  T
Q  224 aaatgcacaatttccaataaaat 246  Q
    ||||||||||  |||||||||||    
T  10068226 aaatgcacaa--tccaataaaat 10068206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 10483607 - 10483657
Alignment:
Q  197 gataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  10483607 gataagattttaaatttctaaaatatgtaatacacaatatccaataaaatg 10483657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 35075991 - 35075870
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 223  Q
    ||||||| |||||||||| ||||  |||||||||| |||||||||||||||||||||| || | |||  | |||||||||||||||||||||| ||||||    
T  35075991 tgttaacgtgtgcccttaagacataagttaagaatataaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatatt 35075892  T
Q  224 aaatgcacaatttccaataaaa 245  Q
     |||||||||||| ||| ||||    
T  35075891 gaatgcacaattttcaacaaaa 35075870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 39743563 - 39743465
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||  | |||||| |||| || |||||||| ||||| || || ||| ||||||||||||||||| ||| |||| |||||||| ||||||||||    
T  39743563 agttaagaagtttaaaataaaatttaaacataaattttatcttaaaaatatatgattttaaatttctaaagtataaaatacacaattttcaataaaatg 39743465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 7802113 - 7802007
Alignment:
Q  138 cttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttc 237  Q
    |||| ||||| |||||||||  ||||||| ||||||||    ||||| | ||| || ||||||| |||||||||||||||||||| ||||| |||||||     
T  7802113 cttaagacacaagttaagaaggtaaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatatgaaatgaacaatttt 7802015  T
Q  238 caataaaa 245  Q
    ||||||||    
T  7802014 caataaaa 7802007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 5735964 - 5736021
Alignment:
Q  123 gtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcata 180  Q
    ||||||||||||||||| | | ||| ||||||||||||||||| ||||||||| ||||    
T  5735964 gtgttaacttgtgccctaaggccacaagttaagaatctaaaaaaagaattaaaacata 5736021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 31559096 - 31559170
Alignment:
Q  173 aaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||| ||||||||| |||  | || |||| |||||||||| |||||||| |||||||||||| ||||| ||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatg 31559170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 31558176 - 31558237
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 181  Q
    ||||||||||||| ||| |||| ||||| |||||||||||| |||||  |||||||| ||||    
T  31558176 gtagtgttaacttatgcacttaggacacaagttaagaatcttaaaatgaaattaaataataa 31558237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 25267019 - 25267116
Alignment:
Q  150 gttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||||||| ||||||||||||||||||| |||  | | |||||||||||||||||||| |||||  |||||||||||||||| ||||||    
T  25267019 gttaagaatctaaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatg 25267116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 39908074 - 39907977
Alignment:
Q  133 gtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgca 230  Q
    ||||||||| ||| | |||||| || ||||||||  ||||||| |||||||| ||| | || ||||||| |||||||||||||||||||| |||||||    
T  39908074 gtgcccttaagactcaagttaaaaagctaaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgca 39907977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 2233861 - 2233953
Alignment:
Q  154 agaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||||| ||||||||||||||||||||||||| | | |  | ||||||| ||||||||||| || |||||| |||||| ||||||||| |||||    
T  2233861 agaatataaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaat 2233953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 32162880 - 32162808
Alignment:
Q  151 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 223  Q
    |||||||||||||||| ||||||||||||||||| ||| |  | || ||||||||||| ||||||||||||||    
T  32162880 ttaagaatctaaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatatt 32162808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 11190545 - 11190601
Alignment:
Q  127 taacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaat 183  Q
    |||||||||| |||||||||| |||||| || ||||||||||||||||| |||||||    
T  11190545 taacttgtgctcttatgacacgagttaataagctaaaaatagaattaaaacataaat 11190601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 33902215 - 33902300
Alignment:
Q  161 aaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||| ||||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  33902215 aaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaat 33902300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 24211286 - 24211411
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 219  Q
    |||||||||||||||||  | | ||||| |||||||||||||||||||||||||||||||||||||| | |  | ||||| ||||||  |||||||  ||    
T  24211286 gtagtgttaacttgtgcg-taaggacacaagttaagaatctaaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaa 24211384  T
Q  220 tattaaatgcacaatttccaataaaat 246  Q
    |||| ||| |||||||||||| |||||    
T  24211385 tattgaatacacaatttccaacaaaat 24211411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 46603800 - 46603750
Alignment:
Q  195 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaa 245  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46603800 aagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaa 46603750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 9603578 - 9603492
Alignment:
Q  160 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||||||||||||| |||||||  | | |  | ||||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  9603578 taaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaat 9603492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 9831149 - 9831063
Alignment:
Q  160 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||||||||||||| |||||||  | | |  | ||||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  9831149 taaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaat 9831063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 40291261 - 40291213
Alignment:
Q  198 ataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||| |||||||| || |||| ||| |||||||||||||||||||||||    
T  40291261 ataatattttaaaattttaaagtatcaaatgcacaatttccaataaaat 40291213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 45996544 - 45996496
Alignment:
Q  198 ataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||| ||||||||||| || |||||||||| |||||||| |||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaat 45996496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 3123 - 2999
Alignment:
Q  121 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 220  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| |||| |||||||| || |  || | |||  | ||||||||| |||||| |||||||||    
T  3123 tagtgttaacttgtgccctaatgtcacaagttaagaatctataaatggaattaaaacaga--ttttgtcttgaaaagataagactttaaagttctaaaat 3026  T
Q  221 attaaatgcacaatttccaataaaatg 247  Q
    ||| |||||||||||||||| ||||||    
T  3025 attgaatgcacaatttccaacaaaatg 2999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 19340060 - 19339936
Alignment:
Q  121 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 220  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| |||| |||||||| || |  || | |||  | ||||||||| |||||| |||||||||    
T  19340060 tagtgttaacttgtgccctaatgtcacaagttaagaatctataaatggaattaaaacaga--ttttgtcttgaaaagataagactttaaagttctaaaat 19339963  T
Q  221 attaaatgcacaatttccaataaaatg 247  Q
    ||| |||||||||||||||| ||||||    
T  19339962 attgaatgcacaatttccaacaaaatg 19339936  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 46298659 - 46298562
Alignment:
Q  150 gttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||||||||||||||||||||| |||||||  | |||  | |||||||||||||||||||||| |||||| |||  ||||||||||| ||||||    
T  46298659 gttaagaatctaaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatg 46298562  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 49423448 - 49423364
Alignment:
Q  162 aaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    |||||||||||||| |||||||  ||||| || ||||||||||||||||||| ||||| || ||||||||||||| |||||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaat 49423364  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 31501006 - 31501133
Alignment:
Q  113 aaaagaagtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatt 212  Q
    |||| ||||||||||||||| |||  | | | ||| | ||||||||||||||||  ||||||||||||| || | | |  | ||||||||||||||||||    
T  31501006 aaaaaaagtagtgttaacttatgctttaagggcacaaattaagaatctaaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatt 31501105  T
Q  213 tctaaaatattaaatgcacaatttccaa 240  Q
    |||| || ||||||||||||||||||||    
T  31501106 tctagaacattaaatgcacaatttccaa 31501133  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 23392696 - 23392800
Alignment:
Q  143 gacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataaga-ttttaaatttctaaaatattaaatgcacaatttccaat 241  Q
    ||||| |||||| ||||||||||| ||||||||  ||||||| ||||| || || |||||| ||||||| || ||||||||||||||||||||||  |||    
T  23392696 gacacaagttaaaaatctaaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaat 23392795  T
Q  242 aaaat 246  Q
    |||||    
T  23392796 aaaat 23392800  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 25808472 - 25808569
Alignment:
Q  149 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||||||| |||||||||| ||||||||||||||||  | |||  | ||||||| ||||||||||| ||||||||| ||| ||||||||| || |||||    
T  25808472 agttaaggatctaaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaat 25808569  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 34967793 - 34967742
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 175  Q
    |||||||||||||||||  | ||| ||||||||| |||||||||||||||||    
T  34967793 tgttaacttgtgcccttggggcacaagttaagaaactaaaaatagaattaaa 34967742  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 47449300 - 47449243
Alignment:
Q  126 ttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaat 183  Q
    |||||||||||||||| | ||| || ||||||||| ||||||||||||| | ||||||    
T  47449300 ttaacttgtgcccttaggccacaagataagaatcttaaaatagaattaactaataaat 47449243  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 11152344 - 11152212
Alignment:
Q  120 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcata------aattatatctcaagaagataagattttaaattt 213  Q
    ||||||||||||||| || ||| || || |||||||||| |||||||  |||||||| |||      |||||| |||  |||||||||||||||||||||    
T  11152344 gtagtgttaacttgtacctttaggatacaagttaagaatttaaaaatgaaattaaattatagtagtaaattatgtcttgagaagataagattttaaattt 11152245  T
Q  214 ctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||| |||||| |||||||||||||||| |||||    
T  11152244 ctagaatattgaatgcacaatttccaacaaaat 11152212  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 2126179 - 2126269
Alignment:
Q  156 aatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 246  Q
    ||||||||||| |||||||||||||||| || |||  | || ||||| |||||||||| ||||||||| |||||||||||||||| |||||    
T  2126179 aatctaaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaat 2126269  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 5578141 - 5578025
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 223  Q
    |||||||||||| | | | | ||| ||||||| ||||||||| ||||||||| |||||||| | | |  | || ||||| ||||||| ||  || |||||    
T  5578141 tgttaacttgtgtcataagggcacaagttaaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatatt 5578042  T
Q  224 aaatgcacaatttccaa 240  Q
    |||||||||||||||||    
T  5578041 aaatgcacaatttccaa 5578025  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 15081331 - 15081379
Alignment:
Q  199 taagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  15081331 taagattttaaatttctaaaagatagaatgcacaattttcaataaaatg 15081379  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 4762065 - 4762102
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatcta 161  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  4762065 tgttaacttgtgcccttaagacacaagttaagaatcta 4762102  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 11252696 - 11252647
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaatta 173  Q
    |||||||||||||||||| | ||| || |||| |||||||||||||||||    
T  11252696 tgttaacttgtgcccttagggcacaagataaggatctaaaaatagaatta 11252647  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 2674423 - 2674359
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatat 188  Q
    ||||||||||| |||||||| ||| |  |||||| |||||||||||||||||  |||||| ||||    
T  2674423 tgttaacttgtacccttatggcacgaaataagaacctaaaaatagaattaaaaaataaatgatat 2674359  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 11617277 - 11617373
Alignment:
Q  151 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 247  Q
    |||||||  |||||||  ||||||| |||||||| ||||| |  || |||||||||||||| | ||||| || ||||||||| ||| |||| |||||    
T  11617277 ttaagaaagtaaaaatgaaattaaaacataaattttatcttagaaatataagattttaaatatttaaaacataaaatgcacatttttcaatcaaatg 11617373  T

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Target: scaffold1786 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 491 - 398
Alignment:
Q  143 gacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaattt 236  Q
    ||||| |||||| |||||||||||  |||||||  ||||||| ||||| || || ||||||||||||| || ||||||||||||||||||||||    
T  491 gacacaagttaaaaatctaaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattt 398  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 176183 - 176302
Alignment:
Q  124 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 223  Q
    |||||||||||||||| | ||||| |||||||||  |||||||  |||||||  ||||||  | |||  | || ||| |||||||||||||||||| ||     
T  176183 tgttaacttgtgccctaaagacacaagttaagaagataaaaatgaaattaaaatataaatgttgtcttgaaaatataggattttaaatttctaaaacata 176282  T
Q  224 aaatgcacaatttccaataa 243  Q
    ||||||||||||| ||||||    
T  176283 aaatgcacaattttcaataa 176302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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