View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_75 (Length: 317)
Name: NF17651_high_75
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 43284063 - 43283791
Alignment:
| Q |
19 |
aatgttcaagcaaaacaagataaaaatgagtcatatttatttaaatataacatcaatttatgaaccatcatacatgtcacc-aagtgctatcccaaattt |
117 |
Q |
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| T |
43284063 |
aatgttcaagcaaaacaagataaaaatgagtcatatttatttaaatataacatcaatttatgaaccatcatacatgtcacccaagtgctatcccaaattt |
43283964 |
T |
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| Q |
118 |
tactaccctagttttgagccatccaattctaattaactgaccagtcagcatccatccatcctcaaacttctgaagaaatatatatgaactgaaccttatt |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43283963 |
tactaccctagttttga--------attctaattaactgaccagtcagcatgcatccatcctcaaacttctgaagaaatatatatgaactgaaccttatt |
43283872 |
T |
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| Q |
218 |
atcagtatacaataccattctacatttaacaaaggattaatgattcttaaatcctcacaaaaaatatagtaagttcaggcc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43283871 |
atcagtatacaataccattctacatttaacaaaggattaatgattcttaaatcctcacaaaaaatatagtaagttcaggcc |
43283791 |
T |
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