View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_high_78 (Length: 312)
Name: NF17651_high_78
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_78 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 1936497 - 1936799
Alignment:
| Q |
1 |
ttatcgatagcgtggagattgttggttgcaaaactggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcctgtcctaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1936497 |
ttatcgatagcgtggagattgttggttgcaaaactggtggaaaatctggcatcatcattaaatccataaaactgatgtattgagactcgtgtcctaaaca |
1936596 |
T |
|
| Q |
101 |
tttaatacnnnnnnnn-cacgagtttaacacaaaaaagagagaatttagcnnnnnnnnnnnntagagaattgattcgtgaacatccttatgtgtcaaacc |
199 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936597 |
tttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaatttagcacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaacc |
1936696 |
T |
|
| Q |
200 |
actattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcatct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1936697 |
actattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaacatcattgtttcatttcgagcacatgctcaattgttcttct |
1936796 |
T |
|
| Q |
300 |
ctc |
302 |
Q |
| |
|
||| |
|
|
| T |
1936797 |
ctc |
1936799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
164 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
238 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
164 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
238 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University