View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_84 (Length: 300)
Name: NF17651_high_84
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_84 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 19214621 - 19214827
Alignment:
| Q |
47 |
aatgcattacaatgaaaa-tcatgtcatcataagaacaatgaaaaaattgacagagtgaaaatcacaaaaaataaagttaagaatttctaacatttttct |
145 |
Q |
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| T |
19214621 |
aatgcattacaatgaaaaatcatgtcatcataagaacaatgaaaaaattgacagagtgaaaatcacaaaaaataaagttaagaatttctaacatttttct |
19214720 |
T |
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| Q |
146 |
caatactactagatgttttcttacgacctttctcgattcgactccttattctttttagagccccttttgttttttcatctttaggatcaagtagtggctt |
245 |
Q |
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| T |
19214721 |
caatactactggatgttttcttacgacctttctcgattcaactccttattctttttagagccccttttgttttttcatctttaggatcaagtagtggctt |
19214820 |
T |
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| Q |
246 |
aacaaat |
252 |
Q |
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||||||| |
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| T |
19214821 |
aacaaat |
19214827 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 26015628 - 26015533
Alignment:
| Q |
120 |
aagttaagaatttctaacatttttctcaatactactagatgttttcttacgacctttctcgattcgactccttattctttttagagccccttttgt |
215 |
Q |
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| T |
26015628 |
aagttaaaaacttctaaccttttttactttacaactagatgttctcttacgacctctctcgatcccactctttattcttcttggagccccttttgt |
26015533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 56109829 - 56109767
Alignment:
| Q |
153 |
actagatgttttcttacgacctttctcgattcgactccttattctttttagagccccttttgt |
215 |
Q |
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|||||||||| ||||||||||| ||||||| |||| |||||||| || ||||||||||||| |
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| T |
56109829 |
actagatgttctcttacgacctctctcgatctcactctttattcttcttggagccccttttgt |
56109767 |
T |
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