View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_9 (Length: 584)
Name: NF17651_high_9
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 61 - 574
Target Start/End: Complemental strand, 26099739 - 26099218
Alignment:
| Q |
61 |
cattgatattcatacgctttgtgtttacttcttctaaaatactttt---------tatttactttaattcgtccaatggcttcttatataaatgtgtggg |
151 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
26099739 |
cattgatattcatacgctt-gtgtttacttcttctaaaatacttttatcctaatttatttactttaattcgtccaatggcttcttatataaatttgtgag |
26099641 |
T |
|
| Q |
152 |
cgtgggagctaacaagcatactcatcaaaagaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttccttcttggaga |
251 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099640 |
cgtgggagctaacaagcatactcatctaaagaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttccttcttggaga |
26099541 |
T |
|
| Q |
252 |
gttaaaattatctttagctactcaaccagggaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagat |
351 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
26099540 |
gttaaaatcatctttagctactcaaccaaagaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagat |
26099441 |
T |
|
| Q |
352 |
catgatcatgttttaaacatggtgttaagaaggtaattaattaattaacactaattacacaaacacaaacacaaatatcatgatattcaattattgatgt |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099440 |
catgatcatgttttaaacatggtgttaagaaggtaattaattaattaacactaattacacaaacacaaacacaaatatcatgatattcaattattgatgt |
26099341 |
T |
|
| Q |
452 |
gaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgctc |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099340 |
gaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgctc |
26099241 |
T |
|
| Q |
552 |
aacaacctggagttgtatctgtg |
574 |
Q |
| |
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|||||||||||||||| |||||| |
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| T |
26099240 |
aacaacctggagttgtgtctgtg |
26099218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 451 - 574
Target Start/End: Complemental strand, 53434401 - 53434278
Alignment:
| Q |
451 |
tgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgct |
550 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||| | ||||| |
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| T |
53434401 |
tgaatggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagtaaatttagttgct |
53434302 |
T |
|
| Q |
551 |
caacaacctggagttgtatctgtg |
574 |
Q |
| |
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||||||||||||||||| |||||| |
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|
| T |
53434301 |
caacaacctggagttgtgtctgtg |
53434278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 445 - 574
Target Start/End: Original strand, 48370830 - 48370959
Alignment:
| Q |
445 |
ttgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattca |
544 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
48370830 |
ttgatgtgaattgtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatgaagcagcctca |
48370929 |
T |
|
| Q |
545 |
attgctcaacaacctggagttgtatctgtg |
574 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
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| T |
48370930 |
attgctcaacaacctggagttgtgtctgtg |
48370959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 446 - 573
Target Start/End: Complemental strand, 53426245 - 53426118
Alignment:
| Q |
446 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
545 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| |||| |
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| T |
53426245 |
tgatgtgaatcatttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaactcaa |
53426146 |
T |
|
| Q |
546 |
ttgctcaacaacctggagttgtatctgt |
573 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
53426145 |
ttgctcaacaacctggagttgtgtctgt |
53426118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 181 - 397
Target Start/End: Complemental strand, 53426525 - 53426306
Alignment:
| Q |
181 |
agaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttcctt---cttggagagttaaaattatctttagctactcaac |
277 |
Q |
| |
|
||||| |||||||||||| ||||| || || | ||| |||||| ||||||||| ||||||||| |||||||||| || || ||| ||| || ||||| |
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|
| T |
53426525 |
agaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaat |
53426426 |
T |
|
| Q |
278 |
cagggaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcatgatcatgttttaaacatggtgtt |
377 |
Q |
| |
|
||| |||||| |||||||||||||||||||| ||||||| | | |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||| |
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| T |
53426425 |
cagagaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatcatgcccatattttaaacacagtgtt |
53426326 |
T |
|
| Q |
378 |
aagaaggtaattaattaatt |
397 |
Q |
| |
|
|| |||||| |||||||||| |
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|
| T |
53426325 |
aaaaaggtacttaattaatt |
53426306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 188 - 392
Target Start/End: Complemental strand, 53434678 - 53434471
Alignment:
| Q |
188 |
taaacatgaaaagaaatccaattttcttgatactaacattttactctctcttccttctt---ggagagttaaaattatctttagctactcaaccagggaa |
284 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| || |||||||| |||||||||||| ||||||| || | || ||||||| | || || ||| |
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|
| T |
53434678 |
taaacatgaaaggaaatccaattttattgatattagtgttttactcactcttccttcttcttggagagtcaaggtcatacttagctaataaatcaaagaa |
53434579 |
T |
|
| Q |
285 |
tgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcatgatcatgttttaaacatggtgttaagaagg |
384 |
Q |
| |
|
||| |||||| ||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| || |||||||||||| |
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|
| T |
53434578 |
tgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcctatgttttaagcacagtgttaagaagg |
53434479 |
T |
|
| Q |
385 |
taattaat |
392 |
Q |
| |
|
|||||||| |
|
|
| T |
53434478 |
taattaat |
53434471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 446 - 567
Target Start/End: Complemental strand, 53321943 - 53321822
Alignment:
| Q |
446 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
545 |
Q |
| |
|
|||||||||| |||||||| || | ||| || |||||||||||||| | ||||||||||| || ||||||| | |||||||| |||||||||| |||| |
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| T |
53321943 |
tgatgtgaattatttaggaacgagagggctttaatacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaactcaa |
53321844 |
T |
|
| Q |
546 |
ttgctcaacaacctggagttgt |
567 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
53321843 |
tagctcaacaacctggagttgt |
53321822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 48370509 - 48370576
Alignment:
| Q |
106 |
ttatttactttaattcgtccaatggcttcttatataaatgtgtgggcgtgggagctaacaagcatact |
173 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||||||| | | ||||||||||||||||||| |
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|
| T |
48370509 |
ttatttactttaactagtccaatggctttttatataaatgtgtgagggcgggagctaacaagcatact |
48370576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 282 - 399
Target Start/End: Complemental strand, 53311184 - 53311063
Alignment:
| Q |
282 |
gaatgataatcaagtttatattgtgtacatgggaggtacggattcaactaatggtacccttcgtaaagatcat-gat---catgttttaaacatggtgtt |
377 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| | | |||||||||||| ||||||||| ||| ||||| || ||||||||||||| |||||| |
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|
| T |
53311184 |
gaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttccaaaatatcatatatatccatgttttaaacacggtgtt |
53311085 |
T |
|
| Q |
378 |
aagaaggtaattaattaattaa |
399 |
Q |
| |
|
|||||| ||| ||| ||||||| |
|
|
| T |
53311084 |
aagaagttaactaactaattaa |
53311063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 53434806 - 53434734
Alignment:
| Q |
106 |
ttatttactttaattcgtccaatggcttcttatataaatgtgtgggcgtgggagctaacaagcatactcatcaa |
179 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||||||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
53434806 |
ttatttactttaactagtccg-tggcttcttatataaatgtgtgcgagggggagctaataagcatactcatcaa |
53434734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 567
Target Start/End: Complemental strand, 53310931 - 53310885
Alignment:
| Q |
521 |
ttatcaaaaaatgaagcaaattcaattgctcaacaacctggagttgt |
567 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
53310931 |
ttattaaaaaatgaagcaaactcaattgctcatcaacatggagttgt |
53310885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 53310978 - 53310932
Alignment:
| Q |
461 |
aggaatgaaaaagctctagtacacaactacaaatacggattctcagg |
507 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
53310978 |
aggaatgaaaaggctctcgtacacaattacaaacacggattctcagg |
53310932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 53435741 - 53435701
Alignment:
| Q |
61 |
cattgatattcatacgctttgtgtttacttcttctaaaata |
101 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
53435741 |
cattgatattcatacggtttgtgttttcttcttctataata |
53435701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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