View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_high_94 (Length: 278)
Name: NF17651_high_94
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_high_94 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 3702870 - 3703136
Alignment:
| Q |
17 |
catctctgagaacatgattttattttttgctgtttgttta----tttacataatgttgaagtggctttgtataagataagatgtatggttagattcagag |
112 |
Q |
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| T |
3702870 |
catctctgagaacatgattttattttttgctgtttgtttatttatttacataatgttgatgtggctttgtataagataagatgtatggttagattcagag |
3702969 |
T |
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| Q |
113 |
ttgtaactcaattatatacactttcatagccaaataagagatcaattaat-aaaattgcaacattcttttgtttcatgtattattttgtatcattcatag |
211 |
Q |
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| T |
3702970 |
ttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaaattgcaacattcttttctttcatgtattattttgtatcattcatag |
3703069 |
T |
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| Q |
212 |
tttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttctt |
278 |
Q |
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| T |
3703070 |
tttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcacacttctt |
3703136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 266
Target Start/End: Original strand, 3699346 - 3699475
Alignment:
| Q |
137 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagtt |
236 |
Q |
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| T |
3699346 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaatt |
3699445 |
T |
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| Q |
237 |
gatatagttaagttacatcagtattttaaa |
266 |
Q |
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| T |
3699446 |
gatatagttcagttacatcattgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3699182 - 3699231
Alignment:
| Q |
17 |
catctctgagaacatgattttattttttgctgtttgtttatttacataatgttg |
70 |
Q |
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| T |
3699182 |
catctctgagaacatgattttcttttttgc----tgtttatttacataatgttg |
3699231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 3699251 - 3699283
Alignment:
| Q |
66 |
tgttgaagtggctttgtataagataagatgtat |
98 |
Q |
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| T |
3699251 |
tgttgaagtggctttgtataagataagatgtat |
3699283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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