View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_high_96 (Length: 275)

Name: NF17651_high_96
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_high_96
NF17651_high_96
[»] chr5 (6 HSPs)
chr5 (14-259)||(12685655-12685898)
chr5 (41-125)||(26266512-26266596)
chr5 (41-219)||(20685082-20685264)
chr5 (49-220)||(4236070-4236238)
chr5 (45-123)||(42687525-42687607)
chr5 (77-257)||(20055147-20055320)
[»] chr4 (8 HSPs)
chr4 (41-190)||(15048104-15048256)
chr4 (41-190)||(15106168-15106320)
chr4 (41-176)||(15154464-15154602)
chr4 (41-194)||(10286253-10286409)
chr4 (77-136)||(21276768-21276827)
chr4 (42-134)||(26493204-26493297)
chr4 (41-111)||(36709564-36709634)
chr4 (77-176)||(17464948-17465044)
[»] chr3 (3 HSPs)
chr3 (41-164)||(11271434-11271559)
chr3 (41-224)||(13832945-13833139)
chr3 (41-111)||(16999010-16999082)
[»] chr2 (7 HSPs)
chr2 (41-136)||(16917835-16917929)
chr2 (41-136)||(8172818-8172913)
chr2 (43-164)||(23482618-23482742)
chr2 (77-185)||(21511820-21511930)
chr2 (175-257)||(35406524-35406606)
chr2 (79-164)||(24185301-24185389)
chr2 (92-190)||(21516314-21516414)
[»] chr6 (1 HSPs)
chr6 (41-255)||(31817705-31817912)
[»] chr8 (6 HSPs)
chr8 (41-176)||(17315284-17315422)
chr8 (45-125)||(13539740-13539820)
chr8 (45-125)||(13684654-13684734)
chr8 (45-176)||(17337199-17337333)
chr8 (41-176)||(33168291-33168429)
chr8 (45-174)||(27933191-27933323)
[»] chr7 (5 HSPs)
chr7 (40-134)||(1941543-1941638)
chr7 (41-257)||(6847679-6847900)
chr7 (41-133)||(35103935-35104027)
chr7 (41-190)||(9046246-9046398)
chr7 (66-136)||(10234713-10234784)
[»] chr1 (6 HSPs)
chr1 (41-124)||(28553445-28553528)
chr1 (41-190)||(17734944-17735096)
chr1 (82-213)||(12788678-12788812)
chr1 (77-176)||(8236351-8236453)
chr1 (79-126)||(15918095-15918142)
chr1 (41-109)||(7839501-7839570)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 12685655 - 12685898
Alignment:
Q  14 tactactcaatagaaccggacacttgcagattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagatt 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  12685655 tactactcaatagaaccgtacacttgcagattagattagaaaaagaatttaaataaaatagattttagacttgggttgaatatgattcaatcattagatt 12685754  T
Q  114 agtccaacaatccaaagactaaagtgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatga 213  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||   |||||||||||||||||  |||||||||||||||||||||||||||    
T  12685755 agtccaacaatcccaagactaaagtgtactcagtcacgatcattgtagacaaaggattaaaattacaagac--agaaataaaatgtataaaagtaaatga 12685852  T
Q  214 ctgaatataaagtgttggaattgtacgtaacagaaaagtaaatatc 259  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  12685853 ctgagtataaagtgttggaattgtacataacagaaaagtaaatatc 12685898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 26266596 - 26266512
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatc 125  Q
    |||||| ||||||||||||||||||||||| ||||||  | ||||||||| ||||||||||||||||||||||||||||||||||    
T  26266596 agattatattagaaaaagaatttaaataaagtaaattccatacttgggttaaataggattcaatcattagattagtccaacaatc 26266512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 219
Target Start/End: Complemental strand, 20685264 - 20685082
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaa-ttttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaa 136  Q
    ||||||||||||||||  ||||||||||||| ||| || ||||||||| |||||||||||| | |||||||| |  |||||||  || ||||||   ||     
T  20685264 agattagattagaaaacaaatttaaataaaacaaagttctagacttggcttgaataggatttagtcattagaatcatccaacagccccaagacttagaag 20685165  T
Q  137 gtgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatgactgaat 219  Q
    || |||||||||| | ||||||||||||  |  |   ||||| |||||||||||| | |||| ||||||||||||| ||||||    
T  20685164 gtctactcactcatgttcattgtagacaaaaagtagtaattaaaagacatagaaaaacaatgcataaaagtaaatggctgaat 20685082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 4236238 - 4236070
Alignment:
Q  49 ttagaaaaagaatttaaataaaataaa-ttttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaagtgtactcact 147  Q
    |||||||| |||||||||||||| ||| |||||||||||  |||||||||||| | | |||||| | |||||||||||| ||    ||||| |||||||     
T  4236238 ttagaaaacgaatttaaataaaacaaagttttagacttgatttgaataggatttagtgattagactcgtccaacaatcccaa----aaagtctactcaca 4236143  T
Q  148 cacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatgactgaata 220  Q
    || | ||||||||||||  |  |  || ||| ||||||||||| || |||| ||||| |||||||||||||||    
T  4236142 catgttcattgtagacaaaaagtagaatttaaaagacatagaattataatgcataaacgtaaatgactgaata 4236070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 42687525 - 42687607
Alignment:
Q  45 tagattagaaaaa---gaatttaaataaaataaattt-tagacttgggttgaataggattcaatcattagattagtccaacaa 123  Q
    |||||||||||||   |||||||||||||||| || | ||||||||| |||||||||||| |||||||||| || ||||||||    
T  42687525 tagattagaaaaaatagaatttaaataaaatagatatctagacttggtttgaataggatttaatcattagactattccaacaa 42687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 20055320 - 20055147
Alignment:
Q  77 tttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa--gtgtactcactcacgatcattgtagacatgagattaaa 174  Q
    |||| |||||| |||||||||||| |  ||||||| || | ||||||| | | |||||||  || ||||||||||  ||||| |||||||| ||||||||    
T  20055320 tttatacttggtttgaataggattaagccattagactatttcaacaattccatgactaaaaggtctactcactcataatcatagtagacataagattaaa 20055221  T
Q  175 attacaagacatagaaataaaatgtataaaagtaaatgactgaatataaagtgttggaattgtacgtaacagaaaagtaaata 257  Q
    ||    |||     ||||||| || ||||  |||||||||||||| ||||||| ||||| ||||   ||||||||||||||||    
T  20055220 at----aga-----aaataaattgcataattgtaaatgactgaatgtaaagtgctggaaatgtaaagaacagaaaagtaaata 20055147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 15048104 - 15048256
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataa-attttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact--aaag 137  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||| | |||||||| || ||||||||||| ||||||  ||||    
T  15048104 agattagattagaaaaagaatttaaataaaataaggttctagacttggtttgaataggatttagtcattagactattccaacaatcccaagactagaaag 15048203  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaa 190  Q
    | |||||||||| ||| |||||||||| |||||  |||||| |||||||||||    
T  15048204 tatactcactcatgatgattgtagacaagagatataaattaaaagacatagaa 15048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 15106320 - 15106168
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataa-attttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact--aaag 137  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||| | |||||||| || ||||||||||| ||||||  ||||    
T  15106320 agattagattagaaaaagaatttaaataaaataaggttctagacttggtttgaataggatttagtcattagactattccaacaatcccaagactagaaag 15106221  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaa 190  Q
    | |||||||||| ||| |||||||||| |||||  |||||| |||||||||||    
T  15106220 tatactcactcatgatgattgtagacaagagatataaattaaaagacatagaa 15106168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 15154602 - 15154464
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaa---ag 137  Q
    |||||||||||||||| |||||| ||||||||  | | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||   ||    
T  15154602 agattagattagaaaatgaattttaataaaattgagtctagacttaggttgaataggattcaatcattagattagtccaacaatcccaagactaaaagag 15154503  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaat 176  Q
    | |||||||||| |||| | ||||||| | |||||||||    
T  15154502 tatactcactcatgatcgtagtagacaagggattaaaat 15154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 194
Target Start/End: Original strand, 10286253 - 10286409
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaag--- 137  Q
    |||||||||||||||| || | | ||||||||| | | || |  ||||||||||||||||  |||||||||| | |||||||||||  ||||||||        
T  10286253 agattagattagaaaatgagtattaataaaatagagtctaaatctgggttgaataggattagatcattagatcattccaacaatccccagactaaacaaa 10286352  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataa 194  Q
    | || ||| ||| |||||||||| ||| |||||| |||||| |||||||||||||||    
T  10286353 tctattcagtcatgatcattgtatacaagagattgaaattaaaagacatagaaataa 10286409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 21276827 - 21276768
Alignment:
Q  77 tttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa 136  Q
    ||||||||||| |||||||||||| | |||||||| || ||||||||||| |||||||||    
T  21276827 tttagacttggtttgaataggattaagtcattagactattccaacaatcccaagactaaa 21276768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 26493204 - 26493297
Alignment:
Q  42 gattagattagaaaaagaatttaaataaaataaa-ttttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagacta 134  Q
    |||||||||||||||  ||||||||||||| ||| || ||||||||| |||||||||||| | || ||||| |  ||||| ||||| |||||||    
T  26493204 gattagattagaaaacaaatttaaataaaacaaagttctagacttggcttgaataggatttagtccttagactcatccaataatcccaagacta 26493297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 36709564 - 36709634
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataa-attttagacttgggttgaataggattcaatcattaga 111  Q
    |||||| ||||||||| ||||||||||||| ||| ||| ||||||||| |||||||||||| | ||||||||    
T  36709564 agattatattagaaaa-gaatttaaataaactaagattctagacttggtttgaataggatttagtcattaga 36709634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 17465044 - 17464948
Alignment:
Q  77 tttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaagtgtactcactcacgatcattgtagacatgagattaaaat 176  Q
    ||||||||||| ||||||| |||| | |||||||| || ||||||||||| |||||    || ||||||||||  ||||  |||||||| ||||||||||    
T  17465044 tttagacttggtttgaataagattaagtcattagactattccaacaatcccaagac---ggtctactcactcattatcacagtagacataagattaaaat 17464948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 11271559 - 11271434
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact--aaagt 138  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||  ||||||||||| |||||||||| ||||||||||||| || ||||||  |||||    
T  11271559 agattagattagaaaaagaatttaaataaaatagattctagacttcagttgaataggagtcaatcattatattagtccaacaaacctaagactagaaagt 11271460  T
Q  139 gtactcactcacgatcattgtagaca 164  Q
     |||||||||| |||||| |||||||    
T  11271459 ctactcactcatgatcatagtagaca 11271434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 13832945 - 13833139
Alignment:
Q  41 agattagattagaaaa-agaatttaaataaaataaat-tttagacttgggttgaataggattcaatcatt--agattag-----tccaacaatccaaaga 131  Q
    |||||| ||||||||| |||| ||||| |||||| || ||||||||||| |||||||||||| | |||||  |||||||     ||||||||||  || |    
T  13832945 agattatattagaaaacagaacttaaacaaaatagatatttagacttggtttgaataggattaagtcattagagattagactattccaacaatcacaaaa 13833044  T
Q  132 ctaaa--gtgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatgactgaatataaa 224  Q
    |||||  || |||||||||| |||||| |||||||  |||||||| |   || ||||||||||||| |  ||||  |||||||||||||| ||||    
T  13833045 ctaaaaggtctactcactcatgatcatagtagacaaaagattaaagtcgaaaaacatagaaataaatttcataattgtaaatgactgaatgtaaa 13833139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 16999010 - 16999082
Alignment:
Q  41 agattagattagaaaaa-gaatttaaataaaataaattt-tagacttgggttgaataggattcaatcattaga 111  Q
    ||||||||||||||||  ||||||||||||||||  | | || |||||| |||||||||||||| ||||||||    
T  16999010 agattagattagaaaattgaatttaaataaaataggtatctatacttggtttgaataggattcagtcattaga 16999082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 16917929 - 16917835
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa 136  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  16917929 agattagattagaaaaagaatgtaaataaaatagattctagacttgg-ttgaatatgattcaatcattagattagtctaacaatcccaagactaaa 16917835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 8172818 - 8172913
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa 136  Q
    |||||| ||||||||| |||||   |||||||| | |||||||||| ||||| || |||| ||||||||||||| || ||||||||||||||||||    
T  8172818 agattatattagaaaatgaattcctataaaatagagtttagacttgagttgattatgatttaatcattagattattctaacaatccaaagactaaa 8172913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 23482742 - 23482618
Alignment:
Q  43 attagattagaaaaagaatttaaataaaataaattt-tagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact--aaagtg 139  Q
    |||| ||||||||||||||||||| ||||||| ||| ||||||||| |||||||| ||| | |||||||| || ||| ||||||| |||| |  |||||     
T  23482742 attatattagaaaaagaatttaaacaaaataattttgtagacttggtttgaatagaatttagtcattagactattcccacaatcccaagagtagaaagtc 23482643  T
Q  140 tactcactcacgatcattgtagaca 164  Q
    ||||||| || | ||||||||||||    
T  23482642 tactcacacatgttcattgtagaca 23482618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 21511820 - 21511930
Alignment:
Q  77 tttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa--gtgtactcactcacgatcattgtagacatgagattaaa 174  Q
    ||||||||||| |||||||||||| | |||||||| || ||||||||||| |||||||||  || ||||||||||  ||||| |||||||  || | |||    
T  21511820 tttagacttggtttgaataggattaagtcattagactattccaacaatcccaagactaaatggtctactcactcattatcatagtagacaaaaggtaaaa 21511919  T
Q  175 attacaagaca 185  Q
    |||| ||||||    
T  21511920 attaaaagaca 21511930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 35406606 - 35406524
Alignment:
Q  175 attacaagacatagaaataaaatgtataaaagtaaatgactgaatataaagtgttggaattgtacgtaacagaaaagtaaata 257  Q
    |||| ||||||||||||| || || ||||  ||||||||||||||||||| |||||||||||||   |||| |||||||||||    
T  35406606 attaaaagacatagaaatgaattgcataattgtaaatgactgaatataaattgttggaattgtaaagaacataaaagtaaata 35406524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 24185301 - 24185389
Alignment:
Q  79 tagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaagtgtactcactcacgatcattgtagaca 164  Q
    ||||||||||||| |||| ||| ||||||||||||| |||| |||||  ||||||   ||||| |||||||| | |||||| |||||||    
T  24185301 tagacttgggttggatagaattaaatcattagattattccatcaatctcaagactagaaaagtctactcacttatgatcatagtagaca 24185389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 21516314 - 21516414
Alignment:
Q  92 aataggattcaatcattagattagtccaacaatccaaagactaaa--gtgtactcactcacgatcattgtagacatgagattaaaattacaagacataga 189  Q
    ||||||||| | |||||||| || ||||||||||| || ||||||  || |||||||||| |||||| |||||||  || | | ||||| ||||||||||    
T  21516314 aataggattaagtcattagactattccaacaatcccaacactaaatggtctactcactcatgatcatagtagacaaaaggtaataattaaaagacataga 21516413  T
Q  190 a 190  Q
    |    
T  21516414 a 21516414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 255
Target Start/End: Original strand, 31817705 - 31817912
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagactaaa---g 137  Q
    |||||||||||||||| |||||| | ||||||| | | | ||||||||||||||||||||  ||||||        |||||||||| |||||||||   |    
T  31817705 agattagattagaaaatgaatttta-taaaatagagtctcgacttgggttgaataggattagatcatt--------ccaacaatcccaagactaaacaag 31817795  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatgactgaatataaagtgttggaattgt 237  Q
    | |||||||  |||| |||||||||     ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |    
T  31817796 tctactcacctacga-cattgtagatgaaggattaaaattaaaagacataaaaataaaatgcataaaagtaaatgactgaatataaagtgatggaattat 31817894  T
Q  238 acgtaacagaaaagtaaa 255  Q
    |   ||||||||||||||    
T  31817895 aaagaacagaaaagtaaa 31817912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 17315284 - 17315422
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaag 137  Q
    ||||||||||| |||||||||| |||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||||||||  ||||||   | ||    
T  17315284 agattagattataaaaagaattaaaataaaatagattctaaatttgggttgagtaggattcaatcatttgattagttcaacaatctcaagactagaatag 17315383  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaat 176  Q
    | |||||||||| |||||| ||||||| | |||||||||    
T  17315384 tttactcactcatgatcatagtagacaagggattaaaat 17315422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 13539740 - 13539820
Alignment:
Q  45 tagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatc 125  Q
    |||||||||||| |||||| ||||||||||| | || ||||| ||||||||||||||||||||||||||| ||||| ||||    
T  13539740 tagattagaaaacgaattttaataaaataaagtctaaacttgagttgaataggattcaatcattagattattccaataatc 13539820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 13684734 - 13684654
Alignment:
Q  45 tagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatc 125  Q
    |||||||||||| |||||| ||||||||||| | || ||||| ||||||||||||||||||||||||||| ||||| ||||    
T  13684734 tagattagaaaacgaattttaataaaataaagtctaaacttgagttgaataggattcaatcattagattattccaataatc 13684654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 17337199 - 17337333
Alignment:
Q  45 tagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaagtgta 141  Q
    |||||||  ||||||||| |||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||||||||  ||||||   | ||| ||    
T  17337199 tagattattaaaagaattaaaataaaatagattctaaatttgggttgagtaggattcaatcatttgattagttcaacaatctcaagactagaatagttta 17337298  T
Q  142 ctcactcacgatcattgtagacatgagattaaaat 176  Q
    |||||||| |||||| ||||||| | |||||||||    
T  17337299 ctcactcatgatcatagtagacaagggattaaaat 17337333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 33168291 - 33168429
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaag 137  Q
    |||||||||||| ||| | |||   |||||||| ||||||||||| |||||| || |||||||||||||||||| ||||||||||   |||||   ||||    
T  33168291 agattagattaggaaatggattcttataaaatagattttagacttaggttgattatgattcaatcattagattattccaacaatcacgagactagaaaag 33168390  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaat 176  Q
    | |||||||| | |||||| ||||||| |||||||||||    
T  33168391 tttactcactaatgatcatagtagacaagagattaaaat 33168429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 27933323 - 27933191
Alignment:
Q  45 tagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact---aaagtgta 141  Q
    ||||||||||||  | || | |||||||| | | || |||||| |||||||||||||||||| ||||||| | ||||||||| || | |   ||||| ||    
T  27933323 tagattagaaaacaatttcatataaaatagagtctaaacttggtttgaataggattcaatcaatagattatttcaacaatcctaaaagtagaaaagtata 27933224  T
Q  142 ctcactcacgatcattgtagacatgagattaaa 174  Q
     |||||||  ||||||||||||| | |||||||    
T  27933223 ttcactcatcatcattgtagacaagggattaaa 27933191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 1941543 - 1941638
Alignment:
Q  40 cagattagattagaaaaagaatttaaataaaataaa-ttttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagacta 134  Q
    ||||||| |||||||||||||||||||||||||||| || || |||||| |||||||| ||||| |||||| | || ||||||||||| |||||||    
T  1941543 cagattatattagaaaaagaatttaaataaaataaagttctaaacttggtttgaatagaattcagtcattaaactattccaacaatcccaagacta 1941638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 257
Target Start/End: Original strand, 6847679 - 6847900
Alignment:
Q  41 agattagattagaaaa-agaatttaaataaaataaattt-tagacttgggttgaataggat--tcaatcattagattagtccaacaatccaaagacta-- 134  Q
    |||||||||||||||| ||||| |||| |||||| || | ||||||||| |||||||||||  | | |||||||| || ||||||||||| || ||||      
T  6847679 agattagattagaaaatagaatgtaaacaaaatagatatatagacttggtttgaataggatattaagtcattagactattccaacaatcccaaaactagg 6847778  T
Q  135 aagtgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaaataaaatgtataaaagtaaatgactgaatataaagtgttggaat 234  Q
    | || |||||||| | |||||| |||||||  ||||| |||| | ||||||||||| |||| || |||   |||||||| |||||  ||| |||||||||    
T  6847779 aggtctactcacttatgatcatagtagacaaaagatttaaataaaaagacatagaa-taaattgcatagttgtaaatgattgaatgaaaattgttggaat 6847877  T
Q  235 tgtacgtaacagaaaagtaaata 257  Q
    ||||   ||||||||||||||||    
T  6847878 tgtaaagaacagaaaagtaaata 6847900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 35103935 - 35104027
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaa-taaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact 133  Q
    |||||||||||||||| |||||||||||||| ||| |||||| ||||| ||| |||||||| | |||||||| |  ||||||||||||||||||    
T  35103935 agattagattagaaaatgaatttaaataaaactaagttttaggcttggtttg-ataggatttagtcattagactcatccaacaatccaaagact 35104027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 9046398 - 9046246
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaatccaaagacta---aag 137  Q
    ||||||||||||||||  ||||  ||||||||| | |||| | |||| || |||||||||  ||||||| || | ||||||||| | ||| |||   |||    
T  9046398 agattagattagaaaacaaattgtaataaaatagaatttaaatttggtttaaataggattggatcattatatcattccaacaattccaaggctagacaag 9046299  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaa 190  Q
    | |||||||||| |||||| |||||||||  ||  |||||| |||||||||||    
T  9046298 tctactcactcatgatcatcgtagacatgctatataaattaaaagacatagaa 9046246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 10234784 - 10234713
Alignment:
Q  66 ataaaataaattttagacttgggttgaat-aggattcaatcattagattagtccaacaatccaaagactaaa 136  Q
    |||||||| | ||||||||||||||  || |||||||||||||||||||| | ||||||||  |||||||||    
T  10234784 ataaaatagagtttagacttgggtttcattaggattcaatcattagattatttcaacaatcacaagactaaa 10234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 28553528 - 28553445
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattttagacttgggttgaataggattcaatcattagattagtccaacaat 124  Q
    |||||||||||||||| |||||| ||||||||| | | ||||||||||||||||| ||||||||||| |||||| || ||||||    
T  28553528 agattagattagaaaatgaattttaataaaatagagtctagacttgggttgaatatgattcaatcatcagattattctaacaat 28553445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 17734944 - 17735096
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaattt-tagacttgggttgaataggattcaatcattagattagtccaacaatccaaagact--aaag 137  Q
    |||||||||||||||||||||||| ||| |||||  |  ||||||||| |||||||||||| | |||||||| || | ||||||||| ||||||  || |    
T  17734944 agattagattagaaaaagaatttagatataataaggtcctagacttggtttgaataggatttagtcattagactatttcaacaatcctaagactagaacg 17735043  T
Q  138 tgtactcactcacgatcattgtagacatgagattaaaattacaagacatagaa 190  Q
    | ||||||| || | |||||||||||| |||||  |||||| || ||||||||    
T  17735044 tctactcacacatgttcattgtagacaagagatataaattaaaaaacatagaa 17735096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 12788812 - 12788678
Alignment:
Q  82 acttgggttgaataggattcaatcattagattagtccaacaatccaaagacta---aagtgtactcactcacgatcattgtagacatgagattaaaatta 178  Q
    |||||||||||||||| ||| |||||||| ||| | ||||||||| |||||||   || | |||||||||| ||| |||||||||| | ||||||| | |    
T  12788812 acttgggttgaatagggttccatcattagcttatttcaacaatcccaagactagaaaattctactcactcatgataattgtagacaagggattaaagtaa 12788713  T
Q  179 caagacatagaaataaaatgtataaaagtaaatga 213  Q
      |||||| ||||||||||| |||||| |||||||    
T  12788712 agagacatggaaataaaatgcataaaaataaatga 12788678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 8236453 - 8236351
Alignment:
Q  77 tttagacttgggttgaataggattcaatcattagattagtccaacaat-ccaaagactaaa--gtgtactcactcacgatcattgtagacatgagattaa 173  Q
    ||||||||||| ||||||| |||| | |||||||| || ||||||||| ||||||||||||  || |||||||||| |||||| |||||||| |||||||    
T  8236453 tttagacttggtttgaataagattaagtcattagactattccaacaatcccaaagactaaaaggtctactcactcatgatcatagtagacataagattaa 8236354  T
Q  174 aat 176  Q
    |||    
T  8236353 aat 8236351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 15918142 - 15918095
Alignment:
Q  79 tagacttgggttgaataggattcaatcattagattagtccaacaatcc 126  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  15918142 tagacttgagttgattaggattcaatcattagattattccaacaatcc 15918095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 7839570 - 7839501
Alignment:
Q  41 agattagattagaaaaagaatttaaataaaataaa-ttttagacttgggttgaataggattcaatcatta 109  Q
    ||||||||||||||||  ||||||||||||| ||| || ||||||||  ||||||| |||| ||||||||    
T  7839570 agattagattagaaaacaaatttaaataaaacaaagttctagacttgacttgaataagatttaatcatta 7839501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University