View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_1 (Length: 765)
Name: NF17651_low_1
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 753
Target Start/End: Original strand, 32777829 - 32778581
Alignment:
| Q |
1 |
acttggaagatatatgcaaataagttggtaaatatggggaacacttacaccttttggaggcaagttaacaaggagcaaaaagaggcaaaacaaagataca |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777829 |
acttggaagatatatgcaaacaagttggtaaatatggggaacacttacaccttttggaggcaagttaacaaggagcaaaaagaggcaaaacaaagataca |
32777928 |
T |
|
| Q |
101 |
tccatatgttctataatttcttattcaagaatttggttagtcaatgtttggttttctataaacatacacaaataaccaattattgcata-tgagttttag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32777929 |
tccatatgttctataatttcttattcaagaatttggttagtcaatgtttggttttctataaacatacacaaataaccaattattgcataatgagttttag |
32778028 |
T |
|
| Q |
200 |
aataaaagttatgnnnnnnnnnnnnnnnngacnnnnnnngttacaagttataacacttgtgatacgttcacaggttaagaatgtgcctattccaagtgat |
299 |
Q |
| |
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|||||||||||| ||| |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |
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| T |
32778029 |
aataaaagttat-aagtttttttttttttgacaaaaaaagttataagttataacacttgtgatgcgttcacaggctaagaatgtacctattccaagtgat |
32778127 |
T |
|
| Q |
300 |
gaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcactcaagcattttgttttagaatttgagaggctgaagatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32778128 |
gaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcactcaagcattttgttttagaatttgagaggctcaagatt |
32778227 |
T |
|
| Q |
400 |
agtttcatgacagataagaaaatattgtatcgatataaagcgtcttaggaagcgtaattatctcattcaaattgatctttatatgctaaatcatattttt |
499 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32778228 |
aatttcatgacagataagaaaatattgtatcaatataaagcgtcttaggaagcgtaattatctcattcaaattgatctttatatgctaaatcatattttt |
32778327 |
T |
|
| Q |
500 |
gaagatnnnnnnnttattaaccaaatataactatatgcgttcgttggagtctttcgccttataagatttatgtgtctttggctatgaagtgtcaatccat |
599 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32778328 |
gaagataaaaaaattattaaccaaattaaactatatacgttcgctggagtctttcgccttataagatttatgtgtctttggctatgaagcgtcaatccat |
32778427 |
T |
|
| Q |
600 |
acacgaacttgataatgacacattaccaataataatttgagaaaattgtttaccatttgatttttcatgctaacnnnnnnnccttttcttcttggtttgc |
699 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32778428 |
acacgaacttgacaatgacacattaccaataataatttgagaaaattgtttaccatttgatttttcatgctaactttttttccttttcttcttggtttgc |
32778527 |
T |
|
| Q |
700 |
agcaccagacgttcacaatccacattgaaaaggttagatttattatatattctt |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32778528 |
agcaccagacgttcacaatccacattgaaaaggttagatttattatatattctt |
32778581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 7202493 - 7202373
Alignment:
| Q |
269 |
acaggttaagaatgtgcctattccaagtgatgaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcactcaagca |
368 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||| ||||| ||| |||||| | ||||||||| ||||| || |||||||||||||||| | | |
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| T |
7202493 |
acaggttaagaatgtacttattccaaatgatgaacctcaaaaactagtaggcaagtagccaagtctctaacaataatcctctaggtatgtcacttgaacc |
7202394 |
T |
|
| Q |
369 |
ttttgttttagaatttgagag |
389 |
Q |
| |
|
||||||| |||| |||||||| |
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|
| T |
7202393 |
ttttgttctagattttgagag |
7202373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 19024779 - 19024688
Alignment:
| Q |
271 |
aggttaagaatgtgcctattccaagtgatgaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcact |
362 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||| ||||||||| |||| | | ||||||||| ||||| ||| |||||||||| ||||| |
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| T |
19024779 |
aggttaagaatgtacctattccaaatggtgaacctcaaaaaccagtaggcatgtagccaagtctctaacaataagactctaggtatatcact |
19024688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 22067638 - 22067546
Alignment:
| Q |
269 |
acaggttaagaatgtgcctattccaagtgatgaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcact |
362 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||| ||||||| || ||| | | ||||||||| ||||| ||| |||||||||||||||| |
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| T |
22067638 |
acaggttaagaatgtacctattccaaatggtgaacctcaaaaacca-ttagcatgtagccaagtctctaacaataagactctaggtatgtcact |
22067546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 8882259 - 8882379
Alignment:
| Q |
269 |
acaggttaagaatgtgcctattccaagtgatgaacctccaaaaccagttggcaagcaaccaagtctcaaacaacaaggctctaggtatgtcactcaagca |
368 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||| ||||| ||| |||||| | |||| |||| ||||| ||| |||||||||||||||| | | |
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|
| T |
8882259 |
acaggttaagaatgtacttattccaaatgatgaacctcaaaaactagtaggcaagtagccaactctctaacaataagcctctaggtatgtcacttgaacc |
8882358 |
T |
|
| Q |
369 |
ttttgttttagaatttgagag |
389 |
Q |
| |
|
||||||| |||| |||||||| |
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|
| T |
8882359 |
ttttgttctagattttgagag |
8882379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 29117351 - 29117254
Alignment:
| Q |
4 |
tggaagatatatgcaaataagttggtaaatatggggaacacttacaccttttggaggcaagttaacaaggagcaaaaagaggcaaaacaaagatacat |
101 |
Q |
| |
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|||||||| |||||||| |||||| |||||||||| | || ||| || ||||||||| ||| || || || | ||||| |||||| ||||||||||| |
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| T |
29117351 |
tggaagatttatgcaaagaagttgctaaatatgggaagcatttatactttttggaggacagtgaataatgaaccaaaagtggcaaagcaaagatacat |
29117254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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