View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_101 (Length: 273)
Name: NF17651_low_101
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_101 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 41980577 - 41980831
Alignment:
| Q |
2 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41980577 |
agcaagattataattacgaattataattatatacgtgtaggttatgagatttctccaacgtttggtgaattggaagaggaagcaagaaagaaagcatggg |
41980676 |
T |
|
| Q |
102 |
aagaaatgaactttatatgattgctatatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagnnnnnnnagcgac |
201 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41980677 |
aagaaatgaactttatatgattgc--tatatattgttcacattggttgtaattgatgatttcctccggtttcatttcttcttataagtttttttagcgac |
41980774 |
T |
|
| Q |
202 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41980775 |
tttttagtaagttattatgaatgggaattgggagcaattggattctgtagaattttg |
41980831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University