View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_103 (Length: 270)
Name: NF17651_low_103
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_103 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 45679776 - 45679534
Alignment:
| Q |
13 |
tgaaggccctaatttaaatctggatgaatggataaatattaatctaacaataacgattaaccttcttnnnnnnn-caataacgattaatatttgtcattt |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45679776 |
tgaaggtcctaatttaaatctggatgaatggataaatattaatctaacaataacgaataaccttcttaaaaaaaacaataacgattaatatttgtcattt |
45679677 |
T |
|
| Q |
112 |
nnnnnnnntaattgtgggtgtaatcttaaaagtagtaagttaaatatattcttaatgatttaaagattataatcaattggtagtatgttaatcttctaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45679676 |
aaaaaaaataattgtgggtgtaatcttaaaagtagtaagttaaatatattcttaatgatttaaagattataatcaattggtagtatgttaatcttctaac |
45679577 |
T |
|
| Q |
212 |
tcgaattgtttatggattaaatcctcgaatatatatagaaaag |
254 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45679576 |
tcgaattgtttatggattaaatcctggaatatatatagaaaag |
45679534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University