View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_104 (Length: 269)
Name: NF17651_low_104
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 51030823 - 51030587
Alignment:
| Q |
29 |
tattaatctaaaaa-tgaaatgattgtgtacttcatttgcttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagt |
127 |
Q |
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| T |
51030823 |
tattaatctaaaaaatgaaatgattgtgcacttcatttgcttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagt |
51030724 |
T |
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| Q |
128 |
tagagaagatgccaagtgatgttaaacatttcatagaaaacacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttat |
227 |
Q |
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| T |
51030723 |
tagagaagatgccaagtgatgttaaacatttcatagaaaacacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttat |
51030624 |
T |
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| Q |
228 |
gatgggaaatattagtaaaggcaatgtctgtgctgct |
264 |
Q |
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| T |
51030623 |
gatgggaaatattagtaaaggcaatgtttgtgttgct |
51030587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 51063575 - 51063339
Alignment:
| Q |
29 |
tattaatctaaaaa-tgaaatgattgtgtacttcatttgcttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagt |
127 |
Q |
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| T |
51063575 |
tattaatctaaaaaatgaaatgattgtgcacttcatttgcttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagt |
51063476 |
T |
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| Q |
128 |
tagagaagatgccaagtgatgttaaacatttcatagaaaacacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttat |
227 |
Q |
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| T |
51063475 |
tagagaagatgccaagtgatgttaaacatttcatagaaaacacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttat |
51063376 |
T |
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| Q |
228 |
gatgggaaatattagtaaaggcaatgtctgtgctgct |
264 |
Q |
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| T |
51063375 |
gatgggaaatattagtaaaggcaatgtttgtgttgct |
51063339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 264
Target Start/End: Complemental strand, 51069080 - 51068908
Alignment:
| Q |
92 |
accctgctaagctaaaacaatatgtgttaaacaagttagagaagatgccaagtgatgttaaacatttcatagaaaacacagaattagatgcatttcaatc |
191 |
Q |
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| T |
51069080 |
accctgctaaactgaagcaatatgtgttaaacaagctagagaatatgccaagtaatgttatatctatcatagaaaaaacagatttagatgctttccattc |
51068981 |
T |
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| Q |
192 |
agctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtctgtgctgct |
264 |
Q |
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| T |
51068980 |
agctccattgagatatagacatccttgggagcttataatgggaaatattagtaaaggaaatgtttgtgttgct |
51068908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 40617876 - 40618068
Alignment:
| Q |
67 |
cttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagttagagaagatgccaagtgatgttaaacatttcatagaaa |
166 |
Q |
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|||||||| ||||||||| ||||||||| ||||| || ||| ||||||| ||||| ||||||||||| |||||||||||||||| | ||||||||||| |
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| T |
40617876 |
cttacagaaaaagagctactacaagacccggctaaactgaaagaatatgtattaaagaagttagagaaaatgccaagtgatgttagatctttcatagaaa |
40617975 |
T |
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| Q |
167 |
acacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtctgtg |
259 |
Q |
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| T |
40617976 |
acactgagatagatgctttccattcagctccattgagatatagaaatccatgggagctcataatgggaaatattagcaaaggaaatgtttgtg |
40618068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 51035061 - 51034865
Alignment:
| Q |
68 |
ttacagataaagagctagcacaagaccctgctaagctaaaacaatatgtgttaaacaagttagagaagatgccaagtgatgttaaacatttcatagaaaa |
167 |
Q |
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| T |
51035061 |
ttacagataaagagctagcagaggatcctgctaaactaaaacaatatgtgttaagcaagctagaggagattccaagttatgttagatttatcatagaaaa |
51034962 |
T |
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| Q |
168 |
cacagaattagatgcatttcaatcagctccattgagacatagacatccttgggagcttatgatgggaaatattagtaaaggcaatgtctgtgctgct |
264 |
Q |
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| T |
51034961 |
cactaatttagatgctttacattcagctccattgagatatagacatccttgggaactcataatgggaaacattagtaaaaacaatgtttgtgttgct |
51034865 |
T |
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