View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_11 (Length: 571)

Name: NF17651_low_11
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_11
NF17651_low_11
[»] chr2 (2 HSPs)
chr2 (399-560)||(21754712-21754873)
chr2 (399-560)||(21768857-21769018)
[»] chr4 (9 HSPs)
chr4 (180-291)||(720352-720463)
chr4 (180-270)||(702712-702802)
chr4 (180-270)||(771011-771101)
chr4 (16-108)||(720188-720280)
chr4 (16-108)||(771173-771265)
chr4 (468-554)||(3357446-3357533)
chr4 (468-554)||(3367112-3367199)
chr4 (347-387)||(732530-732570)
chr4 (442-499)||(49890941-49890998)
[»] chr6 (4 HSPs)
chr6 (426-560)||(27642639-27642763)
chr6 (468-554)||(34269866-34269952)
chr6 (453-554)||(20074413-20074514)
chr6 (426-476)||(33252697-33252747)
[»] scaffold0007 (1 HSPs)
scaffold0007 (453-560)||(62365-62472)
[»] chr8 (1 HSPs)
chr8 (453-560)||(15831017-15831124)
[»] chr5 (2 HSPs)
chr5 (442-560)||(36432460-36432578)
chr5 (442-567)||(36432813-36432938)
[»] chr7 (6 HSPs)
chr7 (442-554)||(4890206-4890318)
chr7 (468-554)||(792947-793033)
chr7 (468-554)||(808730-808816)
chr7 (468-554)||(3423581-3423668)
chr7 (516-560)||(16264832-16264875)
chr7 (516-560)||(16272498-16272541)
[»] scaffold0278 (2 HSPs)
scaffold0278 (426-477)||(14893-14944)
scaffold0278 (426-477)||(18227-18278)
[»] scaffold0016 (1 HSPs)
scaffold0016 (426-476)||(57617-57667)
[»] scaffold0560 (1 HSPs)
scaffold0560 (442-499)||(9834-9891)
[»] scaffold0014 (1 HSPs)
scaffold0014 (442-499)||(187660-187717)
[»] scaffold0793 (1 HSPs)
scaffold0793 (16-54)||(1611-1649)
[»] chr3 (7 HSPs)
chr3 (429-479)||(27873277-27873327)
chr3 (516-560)||(3675871-3675914)
chr3 (516-560)||(3685006-3685049)
chr3 (516-560)||(20434829-20434872)
chr3 (516-560)||(20448755-20448798)
chr3 (516-560)||(30021705-30021748)
chr3 (516-560)||(41431995-41432038)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 399 - 560
Target Start/End: Complemental strand, 21754873 - 21754712
Alignment:
Q  399 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 498  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21754873 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccaggccc 21754774  T
Q  499 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21754773 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21754712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 399 - 560
Target Start/End: Complemental strand, 21769018 - 21768857
Alignment:
Q  399 ttgaaataaaaatgattnnnnnnnccagagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccc 498  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  21769018 ttgaaataaaaatgattaaaaaaaccggagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaaccggtctattccagaccc 21768919  T
Q  499 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21768918 acacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccctccttt 21768857  T

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Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 720352 - 720463
Alignment:
Q  180 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttctgttcttttg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  720352 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttcttttcttttg 720451  T
Q  280 tgtaggatatga 291  Q
    ||||||||||||    
T  720452 tgtaggatatga 720463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 702802 - 702712
Alignment:
Q  180 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702802 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 702712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 771101 - 771011
Alignment:
Q  180 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  771101 gctctcaacttagtgaagagttagtagttcctttaggtcttgaagacatgaaaaatagttttatacaaacttttcatgatctattttttct 771011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 720188 - 720280
Alignment:
Q  16 cattcatgacattagttctcaaacatgtggcctctggctcttgcatatgcatcacaatacacataaaatctttgtaattgtagaacacttcta 108  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  720188 cattcatgacattagttctctagcatgtggcctctggctcttgcatatgcatcactatacgcataaaagctttgtaattgtagaacacttcta 720280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 771265 - 771173
Alignment:
Q  16 cattcatgacattagttctcaaacatgtggcctctggctcttgcatatgcatcacaatacacataaaatctttgtaattgtagaacacttcta 108  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  771265 cattcatgacattagttctctagcatgtggcctctggctcttgcatatgcatcactatacgcataaaagctttgtaattgtagaacacttcta 771173  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 468 - 554
Target Start/End: Original strand, 3357446 - 3357533
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 554  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3357446 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3357533  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 468 - 554
Target Start/End: Original strand, 3367112 - 3367199
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 554  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||| ||||||||||||    
T  3367112 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctcacccaagacccaaatccttttcgttttatttttctgcaccc 3367199  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 732530 - 732570
Alignment:
Q  347 ctatatatatgcattacattccaattaatatatcaaaacac 387  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  732530 ctatatatatgcattacattccaattaatatatcaaaacac 732570  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 499
Target Start/End: Original strand, 49890941 - 49890998
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 499  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  49890941 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 49890998  T

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Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 426 - 560
Target Start/End: Original strand, 27642639 - 27642763
Alignment:
Q  426 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggccc 525  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  27642639 gagctgtgtatttataaaagggattggagcggttcaacccctgaaccggtct----------attccaggcccacacgcgcccggcctcacccaaggccc 27642728  T
Q  526 aaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||||||||||||||||||||||||||    
T  27642729 aaatcctcttcattttattttctgcaccctccttt 27642763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 468 - 554
Target Start/End: Original strand, 34269866 - 34269952
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 554  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  34269866 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 34269952  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 453 - 554
Target Start/End: Complemental strand, 20074514 - 20074413
Alignment:
Q  453 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 552  Q
    ||||||||||||   ||||||||||||||| ||||| |||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||    
T  20074514 accggttcaaccttggaaccggtctgaaccggtctaatccaagcccacacgcgtctggcttcacccaaggcccaaatcctcttcattttatttcctgcac 20074415  T
Q  553 cc 554  Q
    ||    
T  20074414 cc 20074413  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 476
Target Start/End: Original strand, 33252697 - 33252747
Alignment:
Q  426 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 476  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  33252697 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 33252747  T

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Target: scaffold0007 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 453 - 560
Target Start/End: Original strand, 62365 - 62472
Alignment:
Q  453 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 552  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  62365 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 62464  T
Q  553 cctccttt 560  Q
    ||||||||    
T  62465 cctccttt 62472  T

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Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 453 - 560
Target Start/End: Original strand, 15831017 - 15831124
Alignment:
Q  453 accggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcac 552  Q
    ||||||||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15831017 accggttcaaccttggaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatcctcttcattttattttctgcac 15831116  T
Q  553 cctccttt 560  Q
    ||||||||    
T  15831117 cctccttt 15831124  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 36432460 - 36432578
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 541  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  36432460 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432559  T
Q  542 attttctgcaccctccttt 560  Q
    ||||||||||||| |||||    
T  36432560 attttctgcaccccccttt 36432578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 442 - 567
Target Start/End: Original strand, 36432813 - 36432938
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 541  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| || |||||||| | |||||||||||||||||||||||||||||||||    
T  36432813 aaagggattgaaccggttcaacctttaaaccggtctgaaccagtctaatccaagctcacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 36432912  T
Q  542 attttctgcaccctcctttgctactc 567  Q
    ||||||||||||| ||||| ||||||    
T  36432913 attttctgcacccccctttactactc 36432938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 442 - 554
Target Start/End: Complemental strand, 4890318 - 4890206
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttt 541  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||||||    
T  4890318 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaagcccacacgcgtctggcctcacccaaggcccaaatcctcttcatttt 4890219  T
Q  542 attttctgcaccc 554  Q
    |||||||||||||    
T  4890218 attttctgcaccc 4890206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 468 - 554
Target Start/End: Complemental strand, 793033 - 792947
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 554  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  793033 gaaccggtctgaaccggtctattccaggcccacacgcgcctggcctcacccaaggcccaaatccttttcgttttattttctgcaccc 792947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 468 - 554
Target Start/End: Complemental strand, 808816 - 808730
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcattttattttctgcaccc 554  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||    
T  808816 gaaccggtctgaaccggtctattccaagcccacacgcgcctggcctcacccaagacccaaatccttttcgttttattttctgcaccc 808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 554
Target Start/End: Complemental strand, 3423668 - 3423581
Alignment:
Q  468 gaaccggtctgaacccgtctattccaggcccacacgcgcccggcctcacccaaggcccaaatcctcttcatttta-ttttctgcaccc 554  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||| ||||||| |||||||||| ||| ||||| ||||||||||||    
T  3423668 gaaccggtctgaaccggcctattccaggcccacacgcgcctggcctnacccaagacccaaatccttttcgttttatttttctgcaccc 3423581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 16264875 - 16264832
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16264875 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16264832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 16272541 - 16272498
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  16272541 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 16272498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 14944 - 14893
Alignment:
Q  426 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 477  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  14944 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 14893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 18278 - 18227
Alignment:
Q  426 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtct 477  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  18278 gagctgtgtatttataaaagggattgaaccggttcaatctctgaaccggtct 18227  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 57667 - 57617
Alignment:
Q  426 gagctgtgtatttataaaagggattggaccggttcaacccctgaaccggtc 476  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  57667 gagctgtgtatttataaaagggattgaaccggttcaacttctgaaccggtc 57617  T

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Target: scaffold0560 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 499
Target Start/End: Original strand, 9834 - 9891
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 499  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  9834 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 9891  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 499
Target Start/End: Complemental strand, 187717 - 187660
Alignment:
Q  442 aaagggattggaccggttcaacccctgaaccggtctgaacccgtctattccaggccca 499  Q
    |||||||||| ||||||||||||  | |||||||||||||| ||||| ||||||||||    
T  187717 aaagggattgaaccggttcaacctttaaaccggtctgaaccggtctaatccaggccca 187660  T

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Target: scaffold0793 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 1649 - 1611
Alignment:
Q  16 cattcatgacattagttctcaaacatgtggcctctggct 54  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  1649 cattcatgacattagttctctagcatgtggcctctggct 1611  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 479
Target Start/End: Original strand, 27873277 - 27873327
Alignment:
Q  429 ctgtgtatttataaaagggattggaccggttcaacccctgaaccggtctga 479  Q
    |||| |||||||||  ||||||| |||||||||||| ||||||||||||||    
T  27873277 ctgtctatttataacggggattgaaccggttcaacctctgaaccggtctga 27873327  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 3675871 - 3675914
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3675871 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3675914  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 3685006 - 3685049
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3685006 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 3685049  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 20434829 - 20434872
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20434829 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20434872  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 20448755 - 20448798
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20448755 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 20448798  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 30021705 - 30021748
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  30021705 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 30021748  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 41431995 - 41432038
Alignment:
Q  516 cccaaggcccaaatcctcttcattttattttctgcaccctccttt 560  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  41431995 cccaaggcccaa-tcctcctcattttatttcctgcaccctccttt 41432038  T

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