View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_110 (Length: 260)
Name: NF17651_low_110
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_110 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 29060477 - 29060721
Alignment:
| Q |
16 |
aaattgaaattcaaggtaatggcagggaaaactataatttgccaaagcatacatggaatgtgtaatgataggaaacaattctaaagaaaatcgagatcgt |
115 |
Q |
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| T |
29060477 |
aaattgaaattcaaggtaatggcagggaaaactataatttgccaaagcatacatggaatgtgtaatgataggaaacaattctaaagaaaatcgagatcgt |
29060576 |
T |
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| Q |
116 |
ttccttttaatgtatccatgtttcaatttacaattcatgaagttgagaaaatactttctgtttttgtgtgttatcaacatatgaaacttttctattatgt |
215 |
Q |
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||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29060577 |
ttcattttaatgtacccctgtttcaatttacaattcatgaagttgagaaaatactttctgtttttgtgtgttatcaacatatgaaacttttctattatgt |
29060676 |
T |
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| Q |
216 |
atatgtcctttctcttatgcagttatccatttcatcgtaactacc |
260 |
Q |
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| T |
29060677 |
atatgtcctttctcttatgcagttatccatttcatcgtaactacc |
29060721 |
T |
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