View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_118 (Length: 250)
Name: NF17651_low_118
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_118 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 28426688 - 28426449
Alignment:
| Q |
11 |
cacagaactattcttcagcgtgtatctataatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactcca |
110 |
Q |
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| T |
28426688 |
cacagaactattcttcagcgtgtatctataatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactcca |
28426589 |
T |
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| Q |
111 |
cttgacggagcattccatggtcctgtcctatggattttagtcgaccccttcaatattacgctttctggattacttgtaagcaccataatttgaatcacat |
210 |
Q |
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| T |
28426588 |
cttgacggagcattccatggtcctgtcctatggattttagtcgagcccttcaatattacgctttctggattacttgtaagcaccataatttgaattacat |
28426489 |
T |
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| Q |
211 |
ctcctgaagatggatcctcttcatttctccaagcagtcat |
250 |
Q |
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| T |
28426488 |
ctcctgaagatggatcctcttcatttctccaagcagtcat |
28426449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 28418127 - 28417919
Alignment:
| Q |
39 |
taatacacttcatcttcgttgttgacaaatacaaaatcataaagtggattaggtttcaatccgactactccacttgacggagcattccatggtcctgtcc |
138 |
Q |
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| T |
28418127 |
taatacacttcgtcttcattgttgacaactttataatcataaagcgggttgggtttcattccgacaactccactagagagaggattccatggtccagacc |
28418028 |
T |
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| Q |
139 |
tatggattttagtcgaccccttcaatattacgctttctggattacttgtaagcaccataatttgaatcacatctcctgaagatggatcctcttcatttct |
238 |
Q |
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| T |
28418027 |
tacagattttagttgagcccttccatatcatgctttcgggattgcttgtaaagaccacagatgcatataaatctcctgaagacggatcgtcttcattttt |
28417928 |
T |
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| Q |
239 |
ccaagcagt |
247 |
Q |
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| T |
28417927 |
ccaagcagt |
28417919 |
T |
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