View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_12 (Length: 563)
Name: NF17651_low_12
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_12 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 110 - 563
Target Start/End: Original strand, 34864082 - 34864548
Alignment:
| Q |
110 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcacttcaagcgtaactaattgagtcacttttttggttattctattgctatatgatta |
209 |
Q |
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| T |
34864082 |
aagaaaaaagaagatccactgcaccattgaacatggttaattgcactttaagcgtaactaattgagtcacttttttggttatgctattgctatatgatta |
34864181 |
T |
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| Q |
210 |
tgctaaaacaaacaaataatagactcataa--tcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtaccggaaatcaccaagcca-- |
305 |
Q |
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| T |
34864182 |
tgctaaaacaaacaaataatagagtcataaaatcaaaaacatcatattccactaatcagtcaatgtgcacaacagaagtactggaaattaccaagccata |
34864281 |
T |
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| Q |
306 |
---------agaacaatttatgtcacaacacagtacaagagaataaagtgggttttccatacaactgtaaaatgcataaattacttgcagtccaaggata |
396 |
Q |
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| T |
34864282 |
ttcagaaaaagaacaatttatgttacaacacagtacaagaaaataaagtgggttttccatacaactgtaaaatgcataaattacttgcagtccaaggata |
34864381 |
T |
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| Q |
397 |
gatcacaattgactaagaacggatgccagagggtgcagagttggtcatatccaccttacgcactagggctcatgatctgcagcacattcaatgtttaatg |
496 |
Q |
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| T |
34864382 |
gatcacaattgactaagaacggatgccagaggatgcagagttggtcatatccaccttacgcactagggctcatgatctgcagcacattcaatgtttaatg |
34864481 |
T |
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| Q |
497 |
gatctgatacgctgtcagaattgaacaaagttgaacaaggccaaagaatatcatcaacatacttaaa |
563 |
Q |
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| T |
34864482 |
gatctgatacgctttcagaattgaacaaagttgaacaaggccaaaaaatatcatcaacatacttaaa |
34864548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 34861003 - 34861082
Alignment:
| Q |
38 |
ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
117 |
Q |
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| T |
34861003 |
ccattttcagataacaaatcatcccccatccatcaacttcaagatcaatgccacacttacttgatcatcataaagaaaaa |
34861082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 7945218 - 7945246
Alignment:
| Q |
251 |
atattccactaatcagtcaatgtgcacaa |
279 |
Q |
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| T |
7945218 |
atattccactaatcagtcaatgtgcacaa |
7945246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 362 - 563
Target Start/End: Complemental strand, 51860109 - 51859908
Alignment:
| Q |
362 |
tgtaaaatgcataaattacttgcagtccaaggatagatcacaattgactaagaacggatgccagagggtgcagagttggtcatatccaccttacgcacta |
461 |
Q |
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| T |
51860109 |
tgtaaaatacataaaatacttgcagtccaaggatagatcacaactgactaagaacggatgccagaggatgcagagttggtcatattcaccttactcacta |
51860010 |
T |
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| Q |
462 |
gggctcatgatctgcagcacattcaatgtttaatggatctgatacgctgtcagaattgaacaaagttgaacaaggccaaagaatatcatcaacatactta |
561 |
Q |
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| T |
51860009 |
gggctcatgatctgcagcacacttgatgtttattggatctgatacatggttagaattcaacatagttggacaaagccgaaaaatgtcttcaacatactta |
51859910 |
T |
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| Q |
562 |
aa |
563 |
Q |
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|| |
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| T |
51859909 |
aa |
51859908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 51860187 - 51860141
Alignment:
| Q |
305 |
aagaacaatttatgtcacaacacagtacaagagaataaagtgggttt |
351 |
Q |
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| T |
51860187 |
aagaacaatgtaagtcacaacacaatacaagaaaataaagtgggttt |
51860141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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