View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_120 (Length: 250)
Name: NF17651_low_120
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_120 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 53643774 - 53644015
Alignment:
| Q |
1 |
ctagtctaacggcgcttgccctctgttaaaaaacaataattcttcctcacaattaagtattcccttggcaattggttcaagcttataagtgttgagatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53643774 |
ctagtctaacggcgcttgccctctgttaaaaaacaataattcttcctcacaattaagtattcccttggcaattggttcaagcttataagtgttgagatta |
53643873 |
T |
|
| Q |
101 |
aaatagttgatgtttatcatcttcatgttacatttctttaatttcaatcatttctttgatttcaattccttttgtaattggattttcgatagttggattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53643874 |
aaatagttgatgtttatcatcttcatgttacatttctttaatttcaatcatttctttgatttcaattccttttgtaattggattttcgatagttggattt |
53643973 |
T |
|
| Q |
201 |
taaaattatgtgcttgatagttatcatcttcctgcctttgct |
242 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
53643974 |
tgaaattatgtgcttgatagttatcatcttcctgtctttgct |
53644015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 22112785 - 22112890
Alignment:
| Q |
45 |
cctcacaattaagtattcccttggcaattggttcaagcttataagtgtt--gagattaaaatagttgatgtttatcatcttcatgttacatttctttaat |
142 |
Q |
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|||| ||||||| |||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | || |
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| T |
22112785 |
cctcccaattaaatatttccttggcagttggttcaagcttataaatgttttgagattgaaatagttgatgtttatcatcttcatgttacatttctctgat |
22112884 |
T |
|
| Q |
143 |
ttcaat |
148 |
Q |
| |
|
|||||| |
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|
| T |
22112885 |
ttcaat |
22112890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 40493666 - 40493561
Alignment:
| Q |
45 |
cctcacaattaagtattcccttggcaattggttcaagcttataagtgtt--gagattaaaatagttgatgtttatcatcttcatgttacatttctttaat |
142 |
Q |
| |
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|||| ||||||| |||| |||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| | || |
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| T |
40493666 |
cctcccaattaaatatttccttggcagttggttcaagcttataaatgttttgagattgaaatagttgatgtttatcatcttcatgttacatttctctgat |
40493567 |
T |
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| Q |
143 |
ttcaat |
148 |
Q |
| |
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|||||| |
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|
| T |
40493566 |
ttcaat |
40493561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 22112734 - 22112767
Alignment:
| Q |
5 |
tctaacggcgcttgccctctgttaaaaaacaata |
38 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
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|
| T |
22112734 |
tctaacggcgcttgcactctgttaaaaaacaata |
22112767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 40493717 - 40493684
Alignment:
| Q |
5 |
tctaacggcgcttgccctctgttaaaaaacaata |
38 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
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|
| T |
40493717 |
tctaacggcgcttgcactctgttaaaaaacaata |
40493684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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