View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_122 (Length: 249)
Name: NF17651_low_122
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_122 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 10317536 - 10317667
Alignment:
| Q |
118 |
catcatgaggtactaattgactaactattaaaaacatgagcctaaaattatgaatcaaaagttataatttaaatgaannnnnnnctccactatatggaga |
217 |
Q |
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| T |
10317536 |
catcatgaggtactaattgactaactattaaaaacatgaggctaaaattatgaatcaaaagttataatttaaatgaatttttttctccactatatggagg |
10317635 |
T |
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| Q |
218 |
agaaaatgggaaaatttattgtggcttataaa |
249 |
Q |
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| T |
10317636 |
agaaaatgggaaaatttattgtggcttataaa |
10317667 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 10317432 - 10317460
Alignment:
| Q |
14 |
atataactaatgactccactaaaaatatg |
42 |
Q |
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| T |
10317432 |
atataactaatgactccactaaaaatatg |
10317460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 47931498 - 47931545
Alignment:
| Q |
132 |
aattgactaactattaaaaacatgagcctaaaattatgaatcaaaagt |
179 |
Q |
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| T |
47931498 |
aattgactaactattaaaaacatgaggctaaaatcataaaacaaaagt |
47931545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 26602812 - 26602784
Alignment:
| Q |
14 |
atataactaatgactccactaaaaatatg |
42 |
Q |
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| T |
26602812 |
atataactaatgactccactaaaaatatg |
26602784 |
T |
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