View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_124 (Length: 247)
Name: NF17651_low_124
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_124 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 28426434 - 28426203
Alignment:
| Q |
1 |
ccaactttcgattccatccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttcatttttatccttctc |
100 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28426434 |
ccaattttcgattccatccacacttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttcatttttatccttctc |
28426335 |
T |
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| Q |
101 |
atctctgagcactaaattaccattgttcaagagctgcacagcaggacttgaagaatttcttgatgcatttgttgaccagacaagagagtcattgtggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28426334 |
atctctgagcactaaattaccattgttcaagagctgcacaacaggacttgaagaatttcttgatgcatttgttgaccagacaagagagtcattgtggttg |
28426235 |
T |
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| Q |
201 |
agaagcacaaggtttccatcttgacttatgat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28426234 |
agaagcacaaggtttccatcttgacttatgat |
28426203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 28417877 - 28417670
Alignment:
| Q |
25 |
tcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttcatttttatccttctcatctctgagcactaaattaccatt |
124 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
28417877 |
tcattccaggtaatagtgtatcacaaggatggtcaaacccttgccacaaaaaactttcttcattgttatccttctcatctctaagtactaaattaccatt |
28417778 |
T |
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| Q |
125 |
gttcaagagctgcacagcaggacttgaagaatttcttgatgcatttgttgaccagacaagagagtcattgtggttgagaagcacaaggtttccatcttga |
224 |
Q |
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| T |
28417777 |
gttcaagagctgcacaacaggacttgaagcctttcttgatgcatttgttgaccaaacaagagagtcattgtggttgagaagcacaaggtttccatcttga |
28417678 |
T |
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| Q |
225 |
cttatgat |
232 |
Q |
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|||||||| |
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| T |
28417677 |
cttatgat |
28417670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 22692089 - 22692160
Alignment:
| Q |
17 |
tccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttcatt |
88 |
Q |
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|||| |||||||||| | ||| | |||||||| |||| |||||||||||||||||||||||||||| |||| |
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| T |
22692089 |
tccaatcttcattcccggtaacaacgtatcacagggatagtcaaagccttgccacaaaaaactttctccatt |
22692160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 10226 - 10298
Alignment:
| Q |
14 |
ccatccactcttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttca |
86 |
Q |
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||||||| ||||||||| | ||||| |||||||||||||| ||||| | ||||||||||||| ||||||| |
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| T |
10226 |
ccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaatgttcttca |
10298 |
T |
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