View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_136 (Length: 231)
Name: NF17651_low_136
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_136 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44816942 - 44817155
Alignment:
| Q |
18 |
tctattggggccaaaatggaaatgaaggttccttagcagatgcttgcaacacaaacaactacaaatttgtaaacatagcttttctatccacttttggcaa |
117 |
Q |
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| T |
44816942 |
tctattggggccaaaatggaaatgaaggttccttagcagatgcttgcaacacaaacaactacaaatttgtaaacatagcttttctatccacttttggcaa |
44817041 |
T |
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| Q |
118 |
tggccaaaatccaactctaaaccttgcaggccattgtgatccagcctcaaacggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggc |
217 |
Q |
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| T |
44817042 |
tggccaaaatccaactctaaaccttgcaggccattgtgatccagcctcaaacggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggc |
44817141 |
T |
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| Q |
218 |
atcaaagtgttgct |
231 |
Q |
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| T |
44817142 |
atcaaagtgttgct |
44817155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44834299 - 44834512
Alignment:
| Q |
18 |
tctattggggccaaaatggaaatgaaggttccttagcagatgcttgcaacacaaacaactacaaatttgtaaacatagcttttctatccacttttggcaa |
117 |
Q |
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|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44834299 |
tctattggggtcaaaacggcaacgaaggttccttagcagatgcttgcaacacaaacaactaccaatttgtaaacatagcttttctatccacttttggcaa |
44834398 |
T |
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| Q |
118 |
tggccaaaatccaactctaaaccttgcaggccattgtgatccagcctcaaacggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggc |
217 |
Q |
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| T |
44834399 |
tggccaaactccaactctaaaccttgctggccattgtgatccagcctcaaacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggc |
44834498 |
T |
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| Q |
218 |
atcaaagtgttgct |
231 |
Q |
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| T |
44834499 |
atcaaagtgttgct |
44834512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 23396743 - 23396549
Alignment:
| Q |
26 |
ggccaaaatggaaatgaaggttccttagcagatgcttgcaacacaaacaactacaaatttgtaaacatagcttttctatccacttttggcaatggccaaa |
125 |
Q |
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|||||||||||||||||||| ||||||||||| |||| | ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
23396743 |
ggccaaaatggaaatgaaggctccttagcagagacttgtagcacaaacaactaccaatttataaacatagcttttctatccacttt-ggcaatggccaaa |
23396645 |
T |
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| Q |
126 |
atc-caactctaaaccttgcaggccattgtgatccagcctcaaacggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaa |
222 |
Q |
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| T |
23396644 |
atcacaact--aaaccttgcaggccattgtgatccatccacaaatggctgcagaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaa |
23396549 |
T |
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