View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_139 (Length: 227)
Name: NF17651_low_139
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_139 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9822263 - 9822040
Alignment:
| Q |
1 |
tcaacctagaaggaatctataacttatatctagaggtaatccaaaaagaatatatcctaagacagtgataaacagagttgttgtgtgtgactcaaaatc- |
99 |
Q |
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| T |
9822263 |
tcaacctagaaggaatctataacttatatctagaggtaatccaaaaaaaaaatatcctaagacagtgataaacagagttgttgtgtgt----caaaatct |
9822168 |
T |
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| Q |
100 |
gagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgtttttcaagaaagttgaaatgcaaggcggtttcaatgcttgac |
199 |
Q |
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| T |
9822167 |
gtgttggaagcattccgtggaaaacgtgaggcattttcactctaaagctgctacttgtttttcaagaaagttgaaatgcgaggcggtttcaatgcttgac |
9822068 |
T |
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| Q |
200 |
aaatcttatgggccacatgactatttct |
227 |
Q |
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| T |
9822067 |
aaatcttatgggccacacgactatttct |
9822040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 13528384 - 13528485
Alignment:
| Q |
78 |
ttgttgtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgt-ttttcaagaaagttgaaat |
176 |
Q |
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| T |
13528384 |
ttgttgtgtgtgactcaaaattgttttgggagcattctattgaaaatgtgaggcatttttactcctaagccgctacttatgttctcaagaaagctgaaat |
13528483 |
T |
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| Q |
177 |
gc |
178 |
Q |
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|| |
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| T |
13528484 |
gc |
13528485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 13617919 - 13618020
Alignment:
| Q |
78 |
ttgttgtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgctacttgt-ttttcaagaaagttgaaat |
176 |
Q |
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| T |
13617919 |
ttgttgtgtgtgactcaaaattgttttgggagcattctattgaaaatgtgaggcatttttactcctaagccgctacttatgttctcaagaaagctgaaat |
13618018 |
T |
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| Q |
177 |
gc |
178 |
Q |
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|| |
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| T |
13618019 |
gc |
13618020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 38985811 - 38985681
Alignment:
| Q |
53 |
tatcctaagacagtgataaacagagttgttgtgtgtgactcaaaatcgagttggaagcattccgtcgaaaacgtgaggcattttcactctaaagctgcta |
152 |
Q |
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| T |
38985811 |
tatccaaagacaatgataaacagagttgttgtgtgtgactcaagatcgtgttggaagtattctatggaaaacgtgaggcattttcattctaaagcctcta |
38985712 |
T |
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| Q |
153 |
cttgtttttcaagaaagttgaaatgcaaggc |
183 |
Q |
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| T |
38985711 |
cttgtttctcaaaaaagctgaaatgcaaggc |
38985681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 38985159 - 38985099
Alignment:
| Q |
150 |
ctacttgtttttcaagaaagttgaaatgcaaggcggtttcaatgcttgacaaatcttatgg |
210 |
Q |
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| T |
38985159 |
ctacttgtttctcaagaaagctaaaatgcaatccggtttcattgcttgacaaatcttatgg |
38985099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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