View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_14 (Length: 553)
Name: NF17651_low_14
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 17585138 - 17584596
Alignment:
| Q |
1 |
cttaggtaaatctggtgctgagattgtatcagccatcagctatgcctgccagccnnnnnnnnnnnnnnnnttaatgagacaaatcatgattggtaaatgg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17585138 |
cttaggtaaatctggtgatgagattgtatcagccatcagctatgcctgccagccaaaaataaaaacaaaattaatgagacaaatcatgattggtaaatgg |
17585039 |
T |
|
| Q |
101 |
gcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttctaaaaacaaagcaaaaatatggatttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17585038 |
gcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaatatggatttct |
17584939 |
T |
|
| Q |
201 |
agaatat--gttgtacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaatcgcttcaccgtaatatccaacccaaggact |
298 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17584938 |
agaatatatgttgtacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaattgcttcaccgtaatatccaacccaaggact |
17584839 |
T |
|
| Q |
299 |
ctaaaattcttttagacatggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacgtcttttggctttatattggca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17584838 |
ctaaaattcttttagacatggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacatcttttggctttatattggca |
17584739 |
T |
|
| Q |
399 |
tgttcagttctgtcatacttgaaggaagaaaaccattgtgctaatcggctagctaattttagcctttccatagattcctttaaatgcactaatgcgacgg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17584738 |
tgttcagttctgtcatacttgaaggaagaaaaccgttgtgctaatcggctagctaattttagcctttccatagattcctttaaatgcactaatgtgacgg |
17584639 |
T |
|
| Q |
499 |
ctcctcctgatgagctgtgcatatactgcttttttatgatatt |
541 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17584638 |
ctcctcctgatgagctgtgcatatactacttttttatgatatt |
17584596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 14741058 - 14741386
Alignment:
| Q |
1 |
cttaggtaaatctggtgctgagattgtatcagccatcagctatgcctgccagccnnnnnnnnnnnnnnnnttaatgagacaaatcatgattggtaaatgg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14741058 |
cttaggtaaatctggtaatgagattgtatcagccatcagctatgcctgccagccaaaaataaaaacaaaattaatgagacaaatcatgattggtaaatgg |
14741157 |
T |
|
| Q |
101 |
gcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttctaaaaacaaagcaaaaatatggatttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14741158 |
gcaatacaagagtcggggatcggatggaattcatgaagttttaggagacacacttagcttctaatctctttttaaaaacaaagcaaaaatatggatttct |
14741257 |
T |
|
| Q |
201 |
aga--atatgttg-tacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaatcgcttcaccgtaatatccaacccaaggac |
297 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14741258 |
agaatatatgttgttacatgttttgacaatccagaatttctcaaaagtaatcaatagttgctctactcaatcgcttcaccgtaatatccaactcaaggac |
14741357 |
T |
|
| Q |
298 |
tctaaaattcttttagacatggttacaga |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14741358 |
tctaaaattcttttagacatggttacaga |
14741386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 317 - 541
Target Start/End: Original strand, 14742262 - 14742482
Alignment:
| Q |
317 |
tggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaacgtcttttggctttatattggcatgttcagttctgtcatac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14742262 |
tggttacagataattgaaaatttagggtggtggttcctacttcaatgcggcacattcaatgtcttttggctttatattggcatgttcagttctgtc---- |
14742357 |
T |
|
| Q |
417 |
ttgaaggaagaaaaccattgtgctaatcggctagctaattttagcctttccatagattcctttaaatgcactaatgcgacggctcctcctgatgagctgt |
516 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14742358 |
ttgaaggacgaaaaccgttgtgctaatcggctagcaaattttagcctttccatagattcctttaaatgcactaatgcgacggctcctcctgatgagctgt |
14742457 |
T |
|
| Q |
517 |
gcatatactgcttttttatgatatt |
541 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
14742458 |
gcatatactacttttttatgatatt |
14742482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 38929922 - 38929841
Alignment:
| Q |
384 |
ggctttatattggcatgttcagttctgtcatacttgaaggaaga-aaaccattgtgctaatcggctagctaattttagcctt |
464 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||| ||||| | |||| ||||||| || ||||| |||||||||||||| |
|
|
| T |
38929922 |
ggctttagattgacatgttcagtttcgtcatacttggaggaaaagaaactgttgtgctgattggctaactaattttagcctt |
38929841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University