View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_141 (Length: 226)

Name: NF17651_low_141
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_141
NF17651_low_141
[»] chr6 (2 HSPs)
chr6 (1-226)||(22685705-22685930)
chr6 (1-226)||(22753138-22753363)
[»] chr4 (9 HSPs)
chr4 (60-140)||(27505197-27505277)
chr4 (59-136)||(51928847-51928924)
chr4 (64-136)||(20485689-20485761)
chr4 (64-136)||(24354856-24354928)
chr4 (64-136)||(27487873-27487945)
chr4 (64-136)||(47042616-47042688)
chr4 (64-136)||(27461060-27461132)
chr4 (64-136)||(27480407-27480479)
chr4 (64-140)||(27477324-27477400)
[»] chr1 (1 HSPs)
chr1 (57-136)||(42396953-42397032)
[»] chr8 (3 HSPs)
chr8 (54-136)||(28811062-28811144)
chr8 (64-136)||(13659627-13659699)
chr8 (64-136)||(13718269-13718341)
[»] chr2 (3 HSPs)
chr2 (54-136)||(26204034-26204116)
chr2 (64-136)||(35808806-35808878)
chr2 (64-136)||(42348136-42348208)
[»] chr7 (1 HSPs)
chr7 (64-136)||(37175757-37175829)
[»] chr5 (1 HSPs)
chr5 (64-136)||(13912390-13912462)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22685930 - 22685705
Alignment:
Q  1 atatattaagaagatagtaaacaatatcaaaagaaaatactaaaaaagaagtaaacaatgtcactttggccgagtggttaaggcgtgtgcctgctaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  22685930 atatattaagaagatagtaaacaatatcaaaagaaaatattaaagaagaagtaaatgatgtcactttggccgagtggttaaggcgtgtgcctgctaagta 22685831  T
Q  101 catggggtttccccgcgagagttcaaatctctcaggtgaccattcnnnnnnnnnnnnnnnnnnnaatgtaaatacctttaacaaacaaagtctccatttt 200  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||||                   |||||||||||||||||||| ||||||||| |||||    
T  22685830 catggggtttccccgtgagagttcgaatctcttaggtgacgattctttttggttttctacttttaatgtaaatacctttaacaaccaaagtctcaatttt 22685731  T
Q  201 accacgtattttttgtactcttatta 226  Q
    |||| |||||||||||||||||||||    
T  22685730 accaagtattttttgtactcttatta 22685705  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22753138 - 22753363
Alignment:
Q  1 atatattaagaagatagtaaacaatatcaaaagaaaatactaaaaaagaagtaaacaatgtcactttggccgagtggttaaggcgtgtgcctgctaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  22753138 atatattaagaagatagtaaacaatatcaaaagaaaatattaaagaagaagtaaatgatgtcactttggccgagtggttaaggcgtgtgcctgctaagta 22753237  T
Q  101 catggggtttccccgcgagagttcaaatctctcaggtgaccattcnnnnnnnnnnnnnnnnnnnaatgtaaatacctttaacaaacaaagtctccatttt 200  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||||                   |||||||||||||||||||| ||||||||| |||||    
T  22753238 catggggtttccccgtgagagttcgaatctcttaggtgacgattctttttggttttctacttttaatgtaaatacctttaacaaccaaagtctcaatttt 22753337  T
Q  201 accacgtattttttgtactcttatta 226  Q
    |||| |||||||||||||||||||||    
T  22753338 accaagtattttttgtactcttatta 22753363  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 27505277 - 27505197
Alignment:
Q  60 gtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcaggtgac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27505277 gtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggtgac 27505197  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 51928847 - 51928924
Alignment:
Q  59 tgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51928847 tgtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 51928924  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 20485761 - 20485689
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20485761 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 20485689  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 24354856 - 24354928
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24354856 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 24354928  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 27487873 - 27487945
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27487873 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 27487945  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 47042616 - 47042688
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47042616 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 47042688  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 27461060 - 27461132
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27461060 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccctgcgagagttcgaatctctcagg 27461132  T

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Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 27480407 - 27480479
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  27480407 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctctcagg 27480479  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 27477324 - 27477400
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcaggtgac 140  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||    
T  27477324 ctttggccgagtgggtaaggcgtgtgcctgctaattacatggggtttccccgcaagatttcgaatctctcaggtgac 27477400  T

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Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 42397032 - 42396953
Alignment:
Q  57 aatgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42397032 aatgtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 42396953  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 28811144 - 28811062
Alignment:
Q  54 aacaatgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28811144 aacaaagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 28811062  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 13659699 - 13659627
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13659699 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 13659627  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 13718341 - 13718269
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13718341 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 13718269  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 26204034 - 26204116
Alignment:
Q  54 aacaatgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26204034 aacaaagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 26204116  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 35808806 - 35808878
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35808806 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 35808878  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 42348208 - 42348136
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42348208 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 42348136  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 37175757 - 37175829
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37175757 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 37175829  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 13912390 - 13912462
Alignment:
Q  64 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcaaatctctcagg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13912390 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcagg 13912462  T

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