View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_142 (Length: 222)

Name: NF17651_low_142
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_142
NF17651_low_142
[»] chr8 (3 HSPs)
chr8 (13-222)||(3663614-3663822)
chr8 (43-196)||(12104906-12105060)
chr8 (42-84)||(15929072-15929115)
[»] chr1 (5 HSPs)
chr1 (15-222)||(14961315-14961522)
chr1 (57-174)||(17336656-17336773)
chr1 (44-105)||(25663506-25663568)
chr1 (44-84)||(28139263-28139304)
chr1 (44-84)||(28142514-28142555)
[»] chr4 (3 HSPs)
chr4 (57-181)||(21614743-21614865)
chr4 (88-214)||(5820157-5820282)
chr4 (86-170)||(5693235-5693319)
[»] chr3 (4 HSPs)
chr3 (42-152)||(26272634-26272745)
chr3 (55-184)||(7555514-7555643)
chr3 (42-102)||(9237221-9237282)
chr3 (44-84)||(10558461-10558502)
[»] chr5 (3 HSPs)
chr5 (43-183)||(18018748-18018888)
chr5 (44-84)||(22035513-22035554)
chr5 (44-84)||(22038739-22038780)
[»] chr7 (5 HSPs)
chr7 (29-100)||(23611514-23611586)
chr7 (29-117)||(22721832-22721921)
chr7 (44-84)||(1634106-1634147)
chr7 (44-84)||(1637351-1637392)
chr7 (44-84)||(44673446-44673487)
[»] chr2 (3 HSPs)
chr2 (40-129)||(23258532-23258622)
chr2 (44-84)||(35076568-35076609)
chr2 (44-84)||(35079826-35079867)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 3663614 - 3663822
Alignment:
Q  13 aaaatcatctcatgcttaatcactatgagtttagctactcatgataatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgac 112  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3663614 aaaatcatctcaggcttaatcactatgagtttagctactcatgataatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgac 3663713  T
Q  113 tatgagttgaatggcaagccaccacaaaatctgcaatccttagcttcaaatgtgtcttcaatatcccaaaaaatctaaacccttccactgaaatgaagtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  3663714 tatgagttgaatggcaagccaccacaaaatctgcaatccttagcttcaaatgtgtcttcaatatccc-aaaaatctaaacccttccacttaaatgaagtt 3663812  T
Q  213 ggccttttat 222  Q
    ||||||||||    
T  3663813 ggccttttat 3663822  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 12104906 - 12105060
Alignment:
Q  43 ttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaa 141  Q
    |||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||| || |||||||||| |||| |||||||||  |||    
T  12104906 ttagctactcatgactaatgcacaaataactagattaaaagaaaacaacattacatgaatttgggactggctatgagttggatggtaagccaccatgaaa 12105005  T
Q  142 tctgcaatccttagcttcaaatgtgtcttcaatatcccaaaaaatctaaaccctt 196  Q
    | |||| |||||   | ||||||||||| |||| |||| |||||||  |||||||    
T  12105006 tttgcagtccttgaatccaaatgtgtctccaatctccccaaaaatcagaaccctt 12105060  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 15929072 - 15929115
Alignment:
Q  42 tttagctactcatg-ataatgcacaaataactaatgtaaaagaa 84  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  15929072 tttagctactcatggataaggcacaaataactaatgtaaaagaa 15929115  T

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Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 14961522 - 14961315
Alignment:
Q  15 aatcatctcatgcttaatcactatgagtttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgact 113  Q
    ||||||||||| | ||||||  | ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||| ||  || ||| |    
T  14961522 aatcatctcatacctaatcataaggagtttagctagtcatggctaatgcacaaataactaatgtaaaagaaaacaacattacatgaaattaagactgaat 14961423  T
Q  114 atgagttgaatggcaagccaccacaaaatctgcaatccttagcttcaaatgtgtcttcaatatcccaaaaaatctaaacccttccactgaaatgaagttg 213  Q
     ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| | || ||| ||| |||||||| | || |||||||||||    
T  14961422 ttgagttggatgggaagccaccacaaaatctgcaatcctaagcttcaaatgtgtcttcaatctacc-aaatatccaaaccctttccctaaaatgaagttg 14961324  T
Q  214 gccttttat 222  Q
    |||||||||    
T  14961323 gccttttat 14961315  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 17336773 - 17336656
Alignment:
Q  57 taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatccttagc 156  Q
    |||||||||||||||||   |||||||||||| |||||||||| ||| | | ||| |||| ||| ||| ||||||||||||||||| || |||||| | |    
T  17336773 taatgcacaaataactagattaaaagaaaacagcattacatgagttttgaactgattatgtgttaaatagcaagccaccacaaaatatgtaatcctcaac 17336674  T
Q  157 ttcaaatgtgtcttcaat 174  Q
    | ||||||||||||||||    
T  17336673 tccaaatgtgtcttcaat 17336656  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 25663506 - 25663568
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgg 105  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||   ||||||||||| ||||    
T  25663506 tagctactcatggctaaagcacaaataactaatgtaaaagaaaaattcattacatgaacttgg 25663568  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 28139263 - 28139304
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  28139263 tagctactcatgactaaagcacaaataactaatgtaaaagaa 28139304  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 28142514 - 28142555
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  28142514 tagctactcatgactaaagcacaaataactaatgtaaaagaa 28142555  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 21614743 - 21614865
Alignment:
Q  57 taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatccttagc 156  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||| ||||||||||||||| ||    
T  21614743 taatgcacaaataactatt--aaaagaaaacaacattacatgaatttgggactcactatgagttggatggcaaaccaccacgaaatctgcaatccttggc 21614840  T
Q  157 ttcaaatgtgtcttcaatatcccaa 181  Q
    | |||||||||||||||| ||||||    
T  21614841 tccaaatgtgtcttcaatctcccaa 21614865  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 5820282 - 5820157
Alignment:
Q  88 aacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatccttagcttcaaatgtgtcttcaatatcccaaaaaatc 187  Q
    ||||||| |||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  5820282 aacattatatgaatttgggactgactatgagttggatgacaagccaccacgaaatctgcaatccttagtttcaaatgtgtcttcaatctcccaaaaaa-c 5820184  T
Q  188 taaacccttccactgaaatgaagttgg 214  Q
     |||||||| | ||| ||| |||||||    
T  5820183 caaacccttgctctggaattaagttgg 5820157  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 5693319 - 5693235
Alignment:
Q  86 acaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatccttagcttcaaatgtgtctt 170  Q
    ||||||||||||||| |  ||  | ||||||| ||| |||||| || |||||||| || ||||| ||||||| ||||||||||||    
T  5693319 acaacattacatgaaatatggtctaactatgacttggatggcatgcgaccacaaattccgcaatgcttagctccaaatgtgtctt 5693235  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 26272745 - 26272634
Alignment:
Q  42 tttagctactcatgat-aatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaa 140  Q
    |||||||||||||| | |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||    
T  26272745 tttagctactcatggttaatgcacaaataactaaattaaaagaaaacaacattgcatgaatttgggattgactatgagttggatggaaaaccaccacaaa 26272646  T
Q  141 atctgcaatcct 152  Q
    ||||||||||||    
T  26272645 atctgcaatcct 26272634  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 7555514 - 7555643
Alignment:
Q  55 gataatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaatctgcaatcctta 154  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||| ||||| ||||||| ||| |||| ||| || ||||||||||||||      
T  7555514 gataatgcacaaataactaaattaaaagaaaacaacattacatgaacttgggactgactttgagttggatgacaaggcactacgaaatctgcaatcctcg 7555613  T
Q  155 gcttcaaatgtgtcttcaatatcccaaaaa 184  Q
    ||| |||||| ||||||||| ||| |||||    
T  7555614 gctccaaatgcgtcttcaatctccaaaaaa 7555643  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9237282 - 9237221
Alignment:
Q  42 tttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatt 102  Q
    ||||||||||||||  ||| ||| ||||||||||||||||||||| |  |||||||||||||    
T  9237282 tttagctactcatggctaaagcataaataactaatgtaaaagaaagcttcattacatgaatt 9237221  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 10558461 - 10558502
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  10558461 tagctactcatgactaaagcacaaataactaatgtaaaagaa 10558502  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 18018888 - 18018748
Alignment:
Q  43 ttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaagccaccacaaaa 141  Q
    |||||||||||||  |||||||||||||| ||   ||||||||||||||||||| ||||||||| | ||||||||||||| |||||||| |||||| |||    
T  18018888 ttagctactcatggctaatgcacaaataaatagattaaaagaaaacaacattacttgaatttgg-actgactatgagttggatggcaagtcaccacgaaa 18018790  T
Q  142 tctgcaatccttagcttcaaatgtgtcttcaatatcccaaaa 183  Q
    |||||||||||  ||| |||||||||||||||| ||||||||    
T  18018789 tctgcaatcctcggctccaaatgtgtcttcaatctcccaaaa 18018748  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 22035554 - 22035513
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  22035554 tagctactcatgactaaagcacaaataactaatgtaaaagaa 22035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 22038780 - 22038739
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  22038780 tagctactcatgactaaagcacaaataactaatgtaaaagaa 22038739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 23611514 - 23611586
Alignment:
Q  29 taatcactatgagtttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaa 100  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| | |||| ||||||||    
T  23611514 taatcactatgaatttagctactcatgactaaagcacaaataactaatgtaaaagaagataacaatacatgaa 23611586  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 22721921 - 22721832
Alignment:
Q  29 taatcactatgagtttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatga 117  Q
    ||||||| | |||||||||||||||||| |||  || ||||||||||||| ||||| |||||||||||||||| || |||  ||||||||    
T  22721921 taatcacaaagagtttagctactcatgactaaaacataaataactaatgttaaagagaacaacattacatgaaatttggaccgactatga 22721832  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 1634106 - 1634147
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  1634106 tagctactcatgactaaagcacaaataactaatgtaaaagaa 1634147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 1637351 - 1637392
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  1637351 tagctactcatgactaaagcacaaataactaatgtaaaagaa 1637392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 44673446 - 44673487
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  44673446 tagctactcatgactaaagcacaaataactaatgtaaaagaa 44673487  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 23258622 - 23258532
Alignment:
Q  40 agtttagctactcatga-taatgcacaaataactaatgtaaaagaaaacaacattacatgaatttgggattgactatgagttgaatggcaa 129  Q
    |||| |||||||||||  |||| ||||||||||||   ||||||||||||||||||||| |||||||||  |||||||||||  |||||||    
T  23258622 agttaagctactcatggctaatccacaaataactagattaaaagaaaacaacattacataaatttgggaccgactatgagttagatggcaa 23258532  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 35076609 - 35076568
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  35076609 tagctactcatgactaaagcacaaataactaatgtaaaagaa 35076568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 35079867 - 35079826
Alignment:
Q  44 tagctactcatga-taatgcacaaataactaatgtaaaagaa 84  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  35079867 tagctactcatgactaaagcacaaataactaatgtaaaagaa 35079826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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