View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_145 (Length: 218)

Name: NF17651_low_145
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_145
NF17651_low_145
[»] scaffold0038 (5 HSPs)
scaffold0038 (146-202)||(47513-47569)
scaffold0038 (149-202)||(47698-47751)
scaffold0038 (66-102)||(29063-29099)
scaffold0038 (77-133)||(47241-47297)
scaffold0038 (65-101)||(40184-40220)
[»] chr6 (5 HSPs)
chr6 (146-202)||(28247351-28247407)
chr6 (149-202)||(28247536-28247589)
chr6 (66-102)||(28228565-28228601)
chr6 (77-133)||(28247079-28247135)
chr6 (65-101)||(28240022-28240058)


Alignment Details
Target: scaffold0038 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 47569 - 47513
Alignment:
Q  146 tatcattattatttatgttcttcaaatgatttctcttttcactttgagttatgatct 202  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  47569 tatcattattatttatgttcttcaaatgatttctctctccactttgagttatgatct 47513  T

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Target: scaffold0038; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 47751 - 47698
Alignment:
Q  149 cattattatttatgttcttcaaatgatttctcttttcactttgagttatgatct 202  Q
    ||||||||||||||||||| |||||||| |||| | ||||||||||||||||||    
T  47751 cattattatttatgttctttaaatgattgctctctccactttgagttatgatct 47698  T

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Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 29063 - 29099
Alignment:
Q  66 tgtcaacagagataatgtaaatatgtaattttaatta 102  Q
    |||||||||||||||||||||||||||||||||||||    
T  29063 tgtcaacagagataatgtaaatatgtaattttaatta 29099  T

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Target: scaffold0038; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 47241 - 47297
Alignment:
Q  77 ataatgtaaatatgtaattttaattatgtgtgcgtacttattttgttacatattatc 133  Q
    ||||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||||    
T  47241 ataatgtaaatatctaattttaattctgtgtgcttatttattatgttacatattatc 47297  T

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Target: scaffold0038; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 40184 - 40220
Alignment:
Q  65 gtgtcaacagagataatgtaaatatgtaattttaatt 101  Q
    |||||||||  ||||||||||||||||||||||||||    
T  40184 gtgtcaacactgataatgtaaatatgtaattttaatt 40220  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 28247407 - 28247351
Alignment:
Q  146 tatcattattatttatgttcttcaaatgatttctcttttcactttgagttatgatct 202  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  28247407 tatcattattatttatgttcttcaaatgatttctctctccactttgagttatgatct 28247351  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 28247589 - 28247536
Alignment:
Q  149 cattattatttatgttcttcaaatgatttctcttttcactttgagttatgatct 202  Q
    ||||||||||||||||||| |||||||| |||| | ||||||||||||||||||    
T  28247589 cattattatttatgttctttaaatgattgctctctccactttgagttatgatct 28247536  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 28228565 - 28228601
Alignment:
Q  66 tgtcaacagagataatgtaaatatgtaattttaatta 102  Q
    |||||||||||||||||||||||||||||||||||||    
T  28228565 tgtcaacagagataatgtaaatatgtaattttaatta 28228601  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 28247079 - 28247135
Alignment:
Q  77 ataatgtaaatatgtaattttaattatgtgtgcgtacttattttgttacatattatc 133  Q
    ||||||||||||| ||||||||||| ||||||| || ||||| ||||||||||||||    
T  28247079 ataatgtaaatatctaattttaattctgtgtgcttatttattatgttacatattatc 28247135  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 28240022 - 28240058
Alignment:
Q  65 gtgtcaacagagataatgtaaatatgtaattttaatt 101  Q
    |||||||||  ||||||||||||||||||||||||||    
T  28240022 gtgtcaacactgataatgtaaatatgtaattttaatt 28240058  T

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