View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_146 (Length: 211)
Name: NF17651_low_146
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_146 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 45705476 - 45705301
Alignment:
| Q |
18 |
agaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccaccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45705476 |
agaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccaccta |
45705377 |
T |
|
| Q |
118 |
tatttataacagaaaatcccaaacaattaattaagcatgaaaaaattacaaaaataacccctcacaaggaggaaat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45705376 |
tatttataacagaaaatcccaaacaattaattaagcatgaaaaaattacaaaaataacccttcacaaggaggaaat |
45705301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 45717834 - 45717725
Alignment:
| Q |
19 |
gaagatgatggatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctat |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||| | |||||| ||||| ||||| |||| | |
|
|
| T |
45717834 |
gaagatgatggatcacttagtgatagcatagatagcatagataattccaggaagataacccaaaatggtgagaatcaaacatatccaaaactcgacctgt |
45717735 |
T |
|
| Q |
119 |
atttataaca |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
45717734 |
atttataaca |
45717725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 45746283 - 45746194
Alignment:
| Q |
29 |
gatcacttagtgataatatagatagcatagataattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctat |
118 |
Q |
| |
|
|||||||| || ||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
45746283 |
gatcacttggtaatagcatagatagcatagagaattccagggagatagccaaaaagggttagcaccaaacagagccagaactccacctat |
45746194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 39591566 - 39591625
Alignment:
| Q |
61 |
aattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctatat |
120 |
Q |
| |
|
|||| |||| |||||||| |||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
39591566 |
aatttcagggagatagcccaaaagggttagcaccaaacagaggcagaactccacctatat |
39591625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 52980642 - 52980583
Alignment:
| Q |
61 |
aattccaggaagatagccaaaaagggtgagcaccaaacagatccagaactccacctatat |
120 |
Q |
| |
|
||||| ||| |||||||| |||||||| |||| |||| ||| |||||||||||||||||| |
|
|
| T |
52980642 |
aattctagggagatagcccaaaagggttagcatcaaatagagccagaactccacctatat |
52980583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University