View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_147 (Length: 211)
Name: NF17651_low_147
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_147 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2623655 - 2623554
Alignment:
| Q |
1 |
atgaataataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgtacatttggagcctgaaaaacatgt |
100 |
Q |
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| T |
2623655 |
atgaatgataggccaagtagtatttatgcaatgacaagtggcggcgtacgtgtgggtcctagttgccatgttttgtacatttggagcctgaaaaacatgt |
2623556 |
T |
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| Q |
101 |
tg |
102 |
Q |
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|| |
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| T |
2623555 |
tg |
2623554 |
T |
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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 2623511 - 2623424
Alignment:
| Q |
125 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcac-aagtgttggcttctctataaatatgagatacttgta |
211 |
Q |
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| T |
2623511 |
tccatcaataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaaagtgttggcttctctataaatatgagatacttgta |
2623424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 26603933 - 26604012
Alignment:
| Q |
130 |
caataaaaagatctaccgtgacccaaatttgctaaaagatccgcacaagtgttggcttctctataaatatgagatacttg |
209 |
Q |
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| T |
26603933 |
caatcaaaatatctatggtgacccaagtttcctaaaaaattcgtacaattgttggcttctctataaatttgagatacttg |
26604012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 36518909 - 36518861
Alignment:
| Q |
157 |
tttgctaaaagatccgcacaagtgttggcttctctataaatatgagata |
205 |
Q |
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||||||| ||||||||||||| | |||||| |||||||||||| ||||| |
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| T |
36518909 |
tttgctagaagatccgcacaactattggctactctataaatataagata |
36518861 |
T |
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